KEGG   Martelella endophytica: TM49_20025
Entry
TM49_20025        CDS       T03801                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
mey  Martelella endophytica
Pathway
mey03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mey00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    TM49_20025
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mey03021]
    TM49_20025
   03400 DNA repair and recombination proteins [BR:mey03400]
    TM49_20025
Enzymes [BR:mey01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     TM49_20025
Transcription machinery [BR:mey03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     TM49_20025
DNA repair and recombination proteins [BR:mey03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      TM49_20025
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 RnfC_N
Other DBs
NCBI-ProteinID: AJY48387
UniProt: A0A0D5LX73
Position
complement(4300893..4305101)
AA seq 1402 aa
MNQEVMNLFNPQAPAQVFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTDLKENQLLSEEEYMLAVDEFGEDQFSA
NIGAEAIYEMLASMDLEKIAGDLRAELAETTSDLKQKKLLKRLKIVENFIESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDMVLGLYYLSIMNEKEPGEGMAFADMGELHHALE
NKVVTLHTKIKGRFKTVDEDGNEVSKIYETTPGRMIIGELLPKNAAVPFETCNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFGHACRAGISFGKDDMVIPDAKHTIVAETEAL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVTEEMMARIRAVEFDPETGRQKQMNSIY
MMSHSGARGSVNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSSHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVNTPDCGTDKGLTMTAIVDAGQVVASIGQRVLGRA
ALVDIEDPVTGELIVEAGRQINEADVIKIEASGIQSVQIRSALTCEVQTGVCQVCYGRDL
ARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLESSYEGTVRIKNRN
VLRNSDGVLVAMGRNMAIQILDQRDQERSSQKVAYGSKLFVDDGDTVRRGQRLAEWDPYT
RPMMTEVSGTVDFEDLVEGLSVTETTDEATGFTKRSVIDWRSTPRGSDLKPAIVIKDADG
EVMKLPRGGEARLPLSVDAILSVEPGQKVSQGDVLARSPLESAKTKDITGGLPRVAELFE
ARRPKDHAVIAEIDGTIRFGRDYKNKRRIQIEPAEDGVEPVEYLIPKAKPFHLQDGDYIE
KGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKIE
ITASGDSEYITGDVVEAIAFENMNEALIEQGKRPAEGEPVLLGITKASLQTPSFFSAASF
QETTKVLTEAAIAGKVDTLQGLKENIIVGRLIPAGTGRAMSQIRRIATTRDDLIIDARRK
ASGADEATPMLSQMNEEPQPGE
NT seq 4209 nt   +upstreamnt  +downstreamnt
atgaaccaagaggtcatgaatcttttcaatccgcaggcgcctgcgcaggtctttgattcg
atccggatctcgatcgccagcccggaaaagatcctttcctggtcttatggcgaaatcaag
aagccggaaaccatcaactatcgtacgttcaagcccgagcgcgacggcctgttctgcgcg
cgcatctttggtccgatcaaggactacgaatgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtgacgctgtcgcgcgttcgccgt
gagcgtatgggtcatatcgagcttgctgctccggttgcccatatctggttcctgaagtcg
cttccgagccgtatctcgacccttctcgacatgacgctgaaggatgtcgagcgcgttctc
tatttcgaaaactacatcgtcaccgagcccggcctcaccgacctgaaggagaaccagctc
ctttcggaagaagagtacatgctcgccgtcgacgaattcggcgaggaccagttctcggcc
aatatcggtgctgaagccatctacgagatgctcgccagcatggatctggagaagatcgcc
ggcgacctgcgtgccgagcttgccgagaccacgtccgacctgaagcagaagaagcttctg
aagcgtctgaagatcgtcgagaacttcatcgaatccggcaaccgtccggaatggatgatc
atgaaggtcgttcccgtgatcccgccggacctcagaccgctggttccgctggacggcggc
cgctttgcgacctccgacctcaacgatctctatcgtcgcgtgatcaaccgtaacaaccgt
ctgaagcgtctcatcgagctgcgcgcgccgggcatcatcatccggaacgagaagcgcatg
cttcaggaatcggttgatgcgctgttcgacaacggccgtcgcggccgcgtcatcaccggc
gcgaacaagcgtccgctgaagtcgctctccgacatgctgaagggcaagcagggccgcttc
cgtcagaacctgctcggcaagcgcgtcgactattccggccgttcggtcatcgtgaccggt
ccggagctgaagctgcaccagtgcggcctgccgaagaagatggcgctcgagctgttcaag
ccgttcatctacgcccgtctcgacgccaaggggtactcctcgaccgtcaagcaggcgaag
aagctggttgagaaggagcgtccggaagtctgggatatcctcgacgaggtcatccgcgag
catccggttctcctgaaccgcgcgccgacgctgcaccgtctgggtatccaggccttcgaa
ccgacgctggtcgaaggcaaggcgatccagctgcatccgctcgtctgcacggccttcaac
gccgacttcgatggtgaccagatggccgttcacgtgccgctgtcgctcgaagcccagctt
gaagcccgcgtgctgatgatgtcgaccaacaacatcctgcacccggccaatggtcagccg
atcatcgtgccgtcgcaggacatggttctcggcctctactacctctcgatcatgaacgag
aaggagccgggcgagggcatggcgtttgccgacatgggcgaactgcatcacgcgctggag
aacaaggtcgtcacgctgcacaccaagatcaagggtcgcttcaagaccgttgacgaggat
ggcaacgaggtctccaagatctacgaaaccacgcccggccgcatgatcatcggcgaactt
ctgccgaagaacgctgccgtgccgttcgagacctgcaaccaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctatcgtcactgcggccagaaggacactgtgatcttc
tgcgaccggatcatgcagctcggcttcggccatgcctgccgcgccggcatttcgttcggc
aaggacgacatggtgatcccggatgccaagcacacgatcgttgccgagaccgaagctctc
gtgaaggagtacgagcagcagtacaatgacggcctgatcacccagggcgaaaagtacaac
aaggtcgttgatgcctggggcaaggctaccgagaaggtcaccgaagagatgatggcccgc
attcgcgcggtcgaattcgacccggagaccggtcgtcagaagcagatgaactcgatctac
atgatgagccattcgggcgcgcgtggttcggtgaaccagatgcgtcagctcggcggcatg
cgcggcctgatggccaagccgtccggcgaaatcatcgagaccccgatcatctcgaacttc
aaggaaggcctgaccgtgaacgagtacttcaactcgtcacacggtgcccgtaaggggctg
gccgataccgccctgaagaccgcgaactcgggctacctgacccgtcgtctcgtcgacgtc
gcacaggactgcatcgtcaacacgccggattgcggtaccgacaagggcctgaccatgacg
gccatcgtcgatgccggccaggtggttgcctcgatcggccagcgcgtgctgggtcgtgcg
gctctcgtcgacatcgaggatccggtcaccggcgaactcatcgtcgaggccggtcgtcag
atcaacgaagccgatgtcatcaagatcgaggcctcgggcatccagtccgtccagatccgt
tcggcgctgacctgcgaagtgcagaccggcgtctgccaggtctgctacggtcgcgacctt
gcccgtggtaccccggtcaacatcggcgaagctgtcggcgtcattgccgcgcagtcgatc
ggtgagcccggtacgcagctgaccatgcgcacgttccaccttggtggtacggcaaccgtg
gttgaccagtcgttcctggaatcctcttacgagggcaccgtgcggatcaagaaccgcaac
gttctgcgcaactccgacggcgttctggtggcgatgggccgcaacatggcgatccagatc
ctcgaccagcgcgatcaggagcggtcgtcgcagaaggttgcctatggttcgaagctgttc
gtggacgatggcgacaccgttcgccgcggtcagcgtctggcggaatgggacccctatacc
cgcccgatgatgacggaagtctccggtacggtcgacttcgaggacctcgtcgaaggtctg
tcggtcaccgaaacgacggacgaggccaccggcttcaccaagcgttcggtcatcgactgg
cgctcgacgccgcgcggttccgacctgaagccggcgatcgtgatcaaggacgccgatggc
gaggtgatgaagctgccgcgtggtggcgaagcccgcctgccgctgtcggttgacgcgatc
ctctcggtcgagccgggccagaaggtcagccagggtgacgtgcttgcgcgttcgccgctg
gaaagcgccaagaccaaggacattaccggtggtttgccgcgcgttgcggaactgttcgaa
gcccgccgtccgaaggaccatgccgtgatcgccgagatcgacggtacgatccgcttcggc
cgcgactacaagaacaagcgccgcatccagatcgagcctgcggaagatggtgtcgagccg
gtggaatatctcattccgaaggccaagccgttccatctgcaggatggcgactacatcgag
aagggcgactacattctcgacggcaacccggctccgcacgacatccttgcgatcaagggc
gtcgaggcgctggcttcctacctcgtcaacgagatccaggaagtctaccgtctgcagggc
gttgtgatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaagatcgag
atcacggcttcgggcgacagcgagtacatcacgggtgatgttgtcgaggcgatcgccttc
gagaacatgaacgaggcgctgatcgagcagggcaagcgtcctgccgaaggcgagccggtg
ctgcttggcatcaccaaggcttcgctgcagaccccgtccttcttctcggcggcttccttc
caggaaaccaccaaggtgctgaccgaagcggcaattgccggcaaggtcgataccctgcag
ggcctgaaggaaaacatcatcgtcggtcgtctgatcccggccggtaccggccgcgcgatg
tcgcagatccgccgcatcgcgacgacccgcgacgacctcatcatcgacgcccgccgcaag
gcttccggcgccgacgaggcgacgccgatgctgtcgcagatgaacgaagagccgcagccg
ggcgaatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   RefGene (33)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (51)   

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