KEGG   Methanobacterium formicicum DSM1535: DSM1535_1230
Entry
DSM1535_1230      CDS       T03743                                 
Name
(GenBank) Replication factor-A domain-containing protein
  KO
K07466  replication factor A1
Organism
mfi  Methanobacterium formicicum DSM1535
Pathway
mfi03030  DNA replication
mfi03420  Nucleotide excision repair
mfi03430  Mismatch repair
mfi03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:mfi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DSM1535_1230
   03420 Nucleotide excision repair
    DSM1535_1230
   03430 Mismatch repair
    DSM1535_1230
   03440 Homologous recombination
    DSM1535_1230
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:mfi03000]
    DSM1535_1230
   03032 DNA replication proteins [BR:mfi03032]
    DSM1535_1230
   03400 DNA repair and recombination proteins [BR:mfi03400]
    DSM1535_1230
Transcription factors [BR:mfi03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    DSM1535_1230
DNA replication proteins [BR:mfi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    DSM1535_1230
DNA repair and recombination proteins [BR:mfi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     DSM1535_1230
   MMR (mismatch excision repair)
     DSM1535_1230
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     DSM1535_1230
SSDB
Motif
Pfam: tRNA_anti-codon CDC24_OB3 Rep_fac-A_C Ssb-like_OB POT1PC DUF5088 RecG_wedge DUF3127 zinc-ribbons_6 DZR_2 YjdM_Zn_Ribbon
Other DBs
NCBI-ProteinID: CEA13567
UniProt: A0A090I8L6
Position
1190085..1192460
AA seq 791 aa
MREISQEIKDEYGKIKDKISYEEFLKKMEEYKEENADVSFIDDISIAQMVVGNYITEKNE
PTEEVKDFWKVADLETGTQHINLLGRVMSISNVKKFTSKKGREGKLANLILADETGRIRV
VFWTENIKLLDKIQEGDVVQINDVEVKQGFREDETHLNLHSSLEKLDPKEYPDLPPYNDK
ITPLNEVKGDEEVNVVGRITRVPRIRTFDRNGRDGKVASLELQDKSGTMQLTLWNKDTQI
IEDLELAEGDAIKVVGAQSRVRNGEVSLNHSWIGRIVKGDFDVPEYQENILKIGDAHEIR
NVTLLGLVSKVYDTITFERDDGTTGKVKSLELEDDTGPIRVTLWNDDTDLDVKKMDLLKI
IGGNIEFDDYSGTNYRVNTNWNSKLIVNPPIDNDLKVLLNEVGKYLKPVKIGDLNNIEED
GEEVDVVGRVVNLYEPNEFQRDDGSMGMVRTIEIADDTGMVRVSLWDNKAEHPMKEGDAI
KIENARSRLGDYQVDLSVGRTSRMVAPSEEEIKALPSLKDVESMIYQTKKIQELAEGDRD
VSLSGRILSIGEPTQFTKSDGSSGLVRSIEIADESGVVRASLWDDQANAPLKEGEAIKIE
NPRVTLRNDNIELSVGRTTLINKISDEEASVPSLEEIEGKLYPSKKIEDIEEGDQNIKVT
GEVVDIRGNKILFEMCPNCNKRVNWVDNAYICDICGEEIKKPNMLMIIGLLLEDDTGTIS
ITFFRKAAEEVLGMTTSEAEEIIATTGDEGSLEEKVGDLVGQQITVIADASFDEYNEEVR
LNARKTLDIKL
NT seq 2376 nt   +upstreamnt  +downstreamnt
atgagggaaattagccaagagataaaggacgaatatgggaaaattaaggacaaaatctca
tatgaagaattcctaaaaaagatggaagaatataaggaagaaaatgcggatgtaagtttt
attgacgatattagcatagcccagatggtagtagggaactacattaccgaaaaaaatgaa
cctaccgaagaagtaaaggacttctggaaagttgcggatttagaaaccggcacccaacac
ataaacctactggggcgagtaatgagtatttccaatgttaaaaaattcaccagcaaaaaa
ggaagagaaggaaaactggcaaatttaatcctggccgatgaaaccgggagaataagagtg
gtcttttggactgaaaacatcaaattgctggataaaatccaggaaggagatgtggtccag
atcaatgatgtggaagtaaaacagggattccgtgaggatgaaacccacctcaacctacat
tcttccctggaaaagttggatccaaaagaatatcctgatttacccccatacaacgataaa
ataacccctttaaacgaagttaaaggagatgaagaggttaacgtggtgggccgtatcacc
cgagttccccggataagaacctttgaccgcaatgggagagatggtaaagtagcctcactg
gaactgcaggataagagtggcaccatgcagttaaccctgtggaacaaggacacccagatc
atcgaagatctggaactggctgaaggagacgccattaaagtagtgggggctcaaagcaga
gttcgcaatggagaagtatccttaaaccactcctggattggcagaatagtcaaaggagac
tttgacgtccccgaatatcaggaaaatattctcaaaataggtgatgcccacgaaataagg
aatgtcacccttttaggactggttagcaaagtttacgacactataaccttcgaacgagac
gatggaaccaccgggaaggtgaagtcactggagttggaagatgatactggccccatacgg
gttaccctatggaacgatgacactgacctggatgtgaagaagatggacctcctgaaaatc
atcggaggaaacattgaatttgatgattattctggcaccaactaccgggtaaacaccaac
tggaacagcaaactaatagtcaacccccccattgacaatgatttaaaggttctcctgaat
gaagtgggtaaatacctgaaaccagtgaaaattggtgatttaaacaacatagaagaagat
ggagaagaagtggatgttgttggacgagtggtaaacctttacgaacctaacgagtttcag
cgagacgacggtagcatgggaatggtgagaactattgaaattgccgatgataccggaatg
gtgagagtttccctgtgggataacaaagcagaacaccctatgaaagagggagatgccatt
aaaatcgagaatgcccgtagccgtctgggggattaccaagtagacctcagtgtgggtcgg
acctcccgaatggttgccccctccgaagaggagatcaaagcacttccctctcttaaggat
gtggaatcaatgatctaccagaccaaaaagatccaggaactggcagaaggtgaccgtgat
gtgagcctctccggccggattttaagcataggagaacctacacaattcaccaaaagtgat
ggtagctctggtttagtacgttccatagagatagccgatgaaagtggagttgtacgagca
tctctctgggatgaccaggccaatgcacccctcaaagaaggagaagccattaaaattgaa
aacccccgagttaccctgagaaacgataacatagaacttagtgtgggtcgaacaaccctt
ataaacaaaatcagcgatgaagaagcctcagtacccagcctagaggagatagaaggaaaa
ttatacccttctaaaaagattgaagatattgaagaaggggaccagaacatcaaagtaacc
ggggaagtggtggatatccgtggtaacaaaatactctttgagatgtgccctaactgtaat
aaaagagttaactgggttgataatgcttatatctgtgatatatgcggagaagaaattaaa
aaacccaatatgttaatgatcatcggtttattgctggaagatgacactggaaccataagt
atcacctttttccgtaaggccgccgaggaagtcctgggcatgaccacctctgaagccgaa
gaaatcattgccacaacgggagatgaaggatcactagaggaaaaggtgggtgatctggtg
ggccagcaaatcacggtgatcgccgatgccagcttcgacgaatacaatgaggaagtgcgt
ttaaacgccaggaaaacactggatattaaactttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (24)   

Download RDF
DBGET integrated database retrieval system