KEGG   Methanoregula formicica: Metfor_2560
Entry
Metfor_2560       CDS       T02392                                 
Name
(GenBank) apurinic endonuclease APN1
  KO
K01151  deoxyribonuclease IV [EC:3.1.21.2]
Organism
mfo  Methanoregula formicica
Pathway
mfo03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:mfo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    Metfor_2560
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mfo03400]
    Metfor_2560
Enzymes [BR:mfo01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.2  deoxyribonuclease IV
     Metfor_2560
DNA repair and recombination proteins [BR:mfo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    AP endonucleases
     Metfor_2560
SSDB
Motif
Pfam: AP_endonuc_2
Other DBs
NCBI-ProteinID: AGB03553
UniProt: L0HJR7
Position
complement(2508421..2509260)
AA seq 279 aa
MVKIGVHVSIAGSLDLAVDRAKDAGCDVFQMFSRNPRGWGYQPVDPSVAEAFLSKIKTTG
LLPVDHMPYLPNLASPKPEIYEKSVATLTAELERCEILGIPYLVTHLGHHLGEGMAGGRS
RVIQAINTALANAGGSTMLLLENTAGEKNSVGSSFEHIRGILDGVEGKERVGICFDTCHA
FAAGYELRTEEGITETLGQLDEAVGLDNLRLIHLNDTKGDRGSGLDRHEHIGLGFIGEEG
FRQILHNRVFSRLPLVCETPVDERRDDRGNIGKVRELAR
NT seq 840 nt   +upstreamnt  +downstreamnt
atggtgaaaatcggggttcatgtctcgattgccggttctctggaccttgcggtagatcgt
gcaaaagatgccggctgcgatgtattccagatgttctcgcggaatccccgtggatgggga
taccagcccgttgacccctccgttgcagaggcatttctgtcgaagattaagacaaccggt
ctcctgccggtcgaccacatgccctacctccccaatcttgcttccccaaaaccggaaatt
tacgagaaatctgttgcaacgctcacggcagaacttgaacggtgtgaaatactgggaatc
ccgtatcttgtcacacacctcggccaccatctcggtgaaggtatggccggggggagatcg
cgcgtaatccaggcaatcaacacggcgctcgcgaatgcagggggttccacgatgctcctc
ctcgagaataccgctggggagaagaacagtgtcggcagcagctttgagcacatccgcggg
atccttgacggggtagagggaaaggagcgtgtcggcatctgttttgacacctgccatgcc
tttgccgcgggctatgaactccgcacggaggagggtattactgagactctcggccagctt
gacgaggctgttggccttgacaacctgaggcttattcatctcaatgatacgaaaggtgat
cggggaagcggcctcgaccggcatgagcatatcggcctcggattcatcggtgaggaaggc
ttccgccagattctccacaatcgggtcttctcccgtcttccgctggtctgcgagacaccc
gttgatgagaggcgggacgaccggggcaatatcgggaaggtgcgggaactggcccggtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (11)   

Download RDF
DBGET integrated database retrieval system