KEGG   Microbacterium foliorum: DXT68_11225
Entry
DXT68_11225       CDS       T05657                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mfol  Microbacterium foliorum
Pathway
mfol03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mfol00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    DXT68_11225
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mfol03400]
    DXT68_11225
Enzymes [BR:mfol01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DXT68_11225
DNA repair and recombination proteins [BR:mfol03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     DXT68_11225
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: AXL12647
UniProt: A0A0F0KV57
Position
2376129..2378108
AA seq 659 aa
MVAEAQNVQIDGRRLRVTNLDKVVYPQTGTTKGEIIAYYTAIAPHLLPLLEGRPVTRKRW
VEGVGTADHPADSFFTKQLEPGAPEWIPRREIRHSEGPKEYPLVDDVPTLVWLAQVAAIE
LHVPQWRFAHDGSPGNPDRLVLDLDPGPGVGLAQCSEVARIARALLADIGLDPVPVTSGS
KGIHLYAALPGAQTSDEISAVVKEVARLIETEHPDLATSTMAKAARGGKVFLDWSQNNGR
KTTISPYSMRGRAQPWVAAPRTWDELEDPDLAQLDFATVMERAASGVDPIAALRPNPASS
ATAADKSASDRPVTAERLAPARHRARLSAAASAPASAAPASVSPMLAENGTPAIARGLSS
PSWVEVKWDGIRAIGTWADGRMLLHARSGTDITARYPELTADGAPFLPVGDAIVDGEIVA
FDRQGRPSFSLLQNRMHLTRPREIEREVVRTPIVFMVFDLLRLDGHDLSAMPLSQRRTLL
DDVIADLDAPVQVPPVFDDVDAALAASAEFGLEGVVVKDPASRYRPGQRSPSWLKLKHTR
TQEVVIVGIRPGRGDREATFGSLLLAVPDAGDLRYVGRVGTGFSDRMLRDLLARLAPLRI
DAAPLDGVPALDASDALWVEPEVVGEVEFANWTPDGVLRHSRWRGLRPDKSPAEVVVES
NT seq 1980 nt   +upstreamnt  +downstreamnt
atggttgcggaggcgcagaacgtgcagatcgacgggcgtcgactgcgcgtcaccaacctc
gacaaggtcgtgtacccccagaccggcaccaccaagggcgagatcatcgcctactacacg
gcgatcgcgccgcatctgctcccgctgctcgagggccgtccggtcacacgcaagcgctgg
gtcgagggcgtcgggaccgcggatcaccccgcagactccttcttcacgaagcagctcgag
ccgggggcgcccgaatggatcccgcggcgggagatccgccattcggagggccccaaggaa
tatccgctggtcgacgacgtgccgaccctcgtctggctcgcgcaggtcgccgcgatcgag
ctgcatgtgccgcagtggcgttttgcgcacgacggttcgccggggaaccccgaccgcctc
gtgctcgacctcgaccccggcccgggcgtcggcctcgcccagtgctccgaagtggcccgc
atcgcccgtgcactgctcgccgacatcggtctcgaccctgtgcccgtcaccagcggcagc
aagggcatccacctctacgccgccctgcccggtgcgcagaccagcgacgagatctccgcc
gtcgtcaaggaagtcgcccgtctcatcgagaccgagcaccccgacctcgccacgagcacc
atggccaaggccgcccgaggcggcaaggtgttcctcgactggagccagaacaacggcagg
aagaccaccatctcgccctactcgatgcgcgggcgcgcacagccgtgggtggccgcgccc
cgcacctgggacgagctcgaggaccccgacctcgcgcagctcgacttcgcgacggtgatg
gagcgggccgcatcgggcgtggatccgatcgccgcgctgcgcccgaacccggcctcgagc
gcgacggctgcggacaagtccgcatccgatcgacccgtcaccgccgagcgactggctccg
gcccgtcaccgcgcgagactgtccgcggccgcgagtgcgccggcatccgctgctccggcc
tcggtgtccccgatgctcgcggagaacggcacgccggcgatcgcccgcggcctcagctca
ccctcctgggtggaggtgaagtgggacggcatccgagcgatcggcacgtgggccgacgga
cggatgctgctgcacgcccgcagcggcaccgacatcaccgcccgatatcccgagctcacc
gccgacggcgcacccttcctccccgtcggcgacgcgatcgtcgacggcgagatcgtggcg
ttcgaccgacagggtcgccccagcttctcgctgctgcagaaccggatgcacctgacgcgt
ccccgcgagatcgaacgcgaagtggtgcgcacgccgatcgtgttcatggtcttcgatctg
cttcgtctcgacgggcatgacctcagcgcgatgcctctttcccagcggcgcaccctgctc
gacgacgtgatcgccgacctcgatgcgcccgtgcaggtgccgccggtgttcgacgacgtc
gatgccgcactcgcggccagcgcggagttcggtctggagggtgtcgtggtcaaggatccc
gcctcccggtaccggccggggcagcgctccccctcctggctcaagctcaagcacacccgc
acgcaggaggtcgtgatcgtcggcatccgcccgggcagaggtgaccgcgaggcgaccttc
ggctccctgctgctcgccgtgcccgatgccggcgacctccgctatgtcgggcgcgtgggc
acgggtttcagcgaccggatgctgcgagacctgctcgcccggctcgcaccgctgcgcatc
gatgcggcaccgctcgacggcgtgcccgcactcgacgcgtccgacgcgctgtgggtggag
cccgaggtggtcggcgaggtcgagttcgcgaactggacgcctgacggcgtgctccgccac
tcccgttggcgcgggcttcgtcccgacaagtcgcccgccgaggtcgtcgtcgagagctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (20)   

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