KEGG T01558: LILAB

Corallococcus macrosporus HW-1: LILAB_16935

Entry

LILAB_16935       CDS       T01558

Name

(GenBank) DEAD-box ATP dependent DNA helicase

K05592

ATP-dependent RNA helicase DeaD [EC:5.6.2.7]

Organism

mfu Corallococcus macrosporus HW-1

Pathway

mfu03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:mfu00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LILAB_16935
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mfu03019]
    LILAB_16935
   03009 Ribosome biogenesis [BR:mfu03009]
    LILAB_16935
Enzymes [BR:mfu01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     LILAB_16935
Messenger RNA biogenesis [BR:mfu03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     LILAB_16935
Ribosome biogenesis [BR:mfu03009]
Prokaryotic type
  rRNA helicases
   LILAB_16935

SSDB

Motif

Pfam:

DEAD Helicase_C DbpA ResIII P-loop_SecA CMS1 Flavi_DEAD

Other DBs

NCBI-ProteinID:

AEI65290

UniProt:

F8CML1

Position

complement(3993269..3995692)

AA seq 807 aa
MSDIQEPNVPGSPAPDEAPTRPAEYIADIGFDDMNLSEPIRQALAERGYTNPTPVQARAF
RPAMEGKDLIVRSKTGTGKTAAFGLPLLEKIPADERRVRALILCPTRELALQVADELKML
ARHKGLKVAAIYGGASMKQQEDALEEGTPIIVGTPGRVFDHINRGNLKLDACDHAVLDEA
DEMLNQGFYEEVTRILDRLPKTRQVLLFSATVPTDIQNLIARYTTNAETLLLSGDVFTVE
HIHHIRYDVSDAFPKPRNLIYVLEKEEPQNAIIFCNTRDDTALVTAVLNRNGFDAELLNG
DLPQKERERVMGKVKRGEVAFMVATDIAARGIDISGLEYVINYSLPEDPAVYLHRVGRTG
RIGNKGTAINLFSGRELATYTALEKKYGIKFDKREMPAPEEAMRLWTERHVREIQEAAGG
SVFEGFLPLAAQLKPRADADDLIAFLLKYFFSHLRMEKAAAAMAAEGREPPPERKFESRE
GGRRERGERKERGDRRERGERDDRRERRGESSERERRPRREESRRERGGEGGRGAAALEA
GPGEAKLWVNLGTADGLGPGSIATALEDAGAPVGKVVRAELRPTFAYVFVAEEDAAAFET
LNGKQHGAKTLRVEKSKPRTERDATPRPPPSPDAGPGEAKLWINLGMDDGMDEAKLPAAL
EAAGAPAGKVLRALLRPTYGYAYVAEDDAPGFEAVNGKLHGEKALKVERHRPRGQRPERR
PRTEALPEIAGQTRLWVGLGKQDGLDEAGVAAALEAAGAPAGKVLRTDLRPTYAYVFVAD
EDVAAFEATHGKPHGERTLKVEQAKRK

NT seq 2424 nt +upstreamnt +downstreamnt
atgagcgacatccaagagccaaacgtgccggggagtccggcgcctgacgaagccccgacg
cgtcccgccgagtacatcgcggacatcggcttcgacgacatgaacctgtcagagcccatc
cgccaagcgctggcggagcgcggttataccaaccccacccccgtccaggcccgcgccttc
cggcccgccatggagggaaaagacctcatcgtccgcagcaagacaggcaccggaaagacg
gccgccttcggacttcccctgctggagaagattcccgccgacgagcgccgcgtgcgggcg
ctcatcctctgccccacccgcgagctggccctccaggtggcggacgagctgaagatgctc
gccaggcacaagggcctgaaggtcgcggccatctacggcggcgcctccatgaagcagcag
gaggacgcgctggaggagggcacgcccatcatcgtcggcacgccgggccgcgtgttcgac
cacatcaaccgcggcaacctgaagctcgacgcgtgcgaccacgccgtcctggatgaagcg
gacgagatgctcaaccagggcttctacgaggaggtcacccgcatcctcgaccgcctcccc
aagacgcgccaggtgctgctcttcagcgccaccgtccccacggacatccagaacctcatc
gcgcgctacacgacgaacgcggagacgctgctgctgtccggcgacgtcttcacggtggag
cacatccaccacatccgctacgacgtgtcggacgccttccccaagccgcgcaacctcatc
tacgtgctggagaaggaagagccgcagaacgccatcatcttctgcaacacccgcgacgac
acggcgctggtgacggcggtgctcaaccgcaacggcttcgacgcggagctgctcaacggg
gacctgccgcagaaggagcgcgagcgggtgatgggcaaggtgaagcgcggcgaggtggcc
ttcatggtcgccacggacatcgcggcgcgcggcatcgacatctccggcctggagtacgtc
atcaactactcgctgccggaggacccggcggtgtacctgcaccgcgtgggccgcaccggc
cgcatcgggaacaagggcaccgccatcaacctcttctccgggcgcgagctggccacgtac
accgcgctggagaagaagtacggcatcaagttcgacaagcgagagatgccggccccggaa
gaggccatgcgcctgtggaccgagcgccacgtgcgcgaaatccaggaggccgcgggcggc
tccgtcttcgagggcttcctgccgctggccgcgcagctcaagccgcgcgcggacgcggat
gacctcatcgccttcctgctcaagtacttcttcagccacctgcgcatggagaaggccgcc
gcggcgatggcggccgaggggcgtgagcctccgccggagcgcaagttcgagagccgcgag
ggcggccggcgcgagcgtggtgagcgcaaggagcgtggcgaccggcgcgagcgcggtgag
cgcgacgaccggcgcgagcggcgcggtgagtcctcggagcgcgagcgccggccccgccgc
gaggagtcgcggcgcgagcgcggcggcgagggtggccgtggcgcggcggcgctggaggcc
ggccctggcgaggccaagctgtgggtgaacctgggcacggcggacggcctggggccgggc
agcatcgccaccgccctggaagacgcgggcgccccggtgggcaaggtggtgcgcgccgag
ctgcgccccaccttcgcgtacgtcttcgtggcggaggaggacgccgccgccttcgagacg
ctcaacggcaagcagcacggcgccaagacgctgcgcgtggagaagagcaagccgcgcacg
gagcgtgacgccacgccccgcccgcccccgtccccggacgcgggccccggcgaggcgaag
ctgtggatcaacctgggcatggacgacggcatggacgaggcgaagctgcccgccgcgctg
gaggccgcgggcgccccggccggcaaggtgctgcgcgccctgctgcgccccacctacggc
tacgcctacgtggccgaggacgacgcgcccggcttcgaggccgtcaacggcaagctccat
ggcgaaaaggcgctgaaggtggagcggcaccgtccgcgcgggcagcgaccggagcgccgc
ccccgcaccgaggccctgccggagattgctggccagacgcgcctgtgggtgggcctgggc
aagcaggacgggctggacgaggcgggcgtggccgccgcgctggaggccgcgggcgctccg
gccggcaaggtgctgcgcacggacctgcgccccacctacgcgtacgtcttcgtcgccgac
gaggatgtggcggccttcgaggccacgcacggcaagccccacggcgagcgcacgctcaag
gtggagcaggccaagcggaagtag

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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