KEGG   Corallococcus macrosporus HW-1: LILAB_28595
Entry
LILAB_28595       CDS       T01558                                 
Name
(GenBank) putative ATP-dependent RNA helicase RhlE
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
mfu  Corallococcus macrosporus HW-1
Pathway
mfu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mfu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LILAB_28595
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mfu03019]
    LILAB_28595
Enzymes [BR:mfu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     LILAB_28595
Messenger RNA biogenesis [BR:mfu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     LILAB_28595
SSDB
Motif
Pfam: DEAD Helicase_C ResIII UTP25 AAA_22 AAA_19 CMS1
Other DBs
NCBI-ProteinID: AEI67600
UniProt: F8CJ01
Position
complement(6974090..6975640)
AA seq 516 aa
MTFDELQLHDTLLRAVKAEGYTTPTPIQQKAIPHALTGRDVLGVAQTGTGKTAAFALPIL
QRLSAKAPAGGARPVRCLVLTPTRELAGQVGDSFQTYGKGLPLRHAVIFGGVGQNPQVQA
LRNGVDVLVATPGRLLDLMEQGFVSLRSLEVFVLDEADRMLDMGFIHDVRRVIKALPPKR
QTLFFSATLPPDIVDLARSILTDPIRVEVSPASSTAETVSQQVYFVEREQKRGLLTHLLK
EGNISRALVFTRTKHGANRVAKQLEGAGVSSAAIHGNKSQNARERALDEFRSGTLRVLVA
TDIAARGIDIDGLSYVVNYDLPNVPEQYVHRIGRTGRAGASGTAVSFCDAEERAYLRDIE
RTIRRNVPVVEDHPYRSGQPAPRPVSHATGAAPEARASGNGGRPQGAPRPAGNGGGGGGH
SAGASRRRRGGRGGGLAEAVDRAAPRAAARRRALVAPAAMAVGVARVAPGAPAVAVPRVR
WRRAPRRRPRPRRCLRAGRRRSGSERLSPAGGLGRP
NT seq 1551 nt   +upstreamnt  +downstreamnt
atgactttcgacgaacttcagcttcacgacaccctcctgcgcgccgtcaaggcggagggc
tacaccacccccacgcccatccagcagaaggccatcccccacgcgttgacggggcgggac
gtcctgggcgtggcccagacgggcacgggcaagacggcggccttcgcgctccccatcctc
cagcggctgtccgccaaggcgcccgcgggcggggcgcggccggtgcgctgcctggtcctg
acgcccacgcgcgagctggcggggcaggtgggtgacagcttccagacctatggcaagggg
ctgcccctgcgccacgcggtcatctttggcggcgtggggcagaacccccaggtgcaggcg
ctgcgcaacggcgtggacgtgctggtggccacgccgggccgcctgctggacctgatggag
cagggcttcgtgtccctgcgctcgctcgaggtcttcgtgctcgacgaggcggaccgcatg
ctcgacatgggcttcatccacgacgtgcggcgcgtcatcaaggcgctgccgcccaagcgg
cagacgctgttcttcagcgccacgctgccgccggacatcgtggacctggctcgcagcatc
ctcaccgaccccatccgcgtggaggtgtcgcccgcctccagcaccgcggagacggtgagc
cagcaggtgtacttcgtggagcgcgagcagaagcgcggcctgctgacgcacctgctgaag
gaaggcaacatctcccgcgcgctcgtcttcacgcgcaccaagcacggcgcgaaccgggtg
gcgaagcagctggagggcgcgggcgtcagctcggcggccatccacggcaacaagagccag
aacgcccgcgagcgcgcgctcgacgagttccgctccgggacgctgcgcgtgctcgtggcc
acggacatcgccgcgcgcggcatcgacatcgacgggctgagctacgtcgtcaactacgac
ctgcccaacgtgccggagcagtacgtgcaccgcatcggccgcaccggccgcgcgggcgcc
agcggcacggcggtgtccttctgcgacgccgaggagcgcgcgtacctgcgcgacatcgag
cgcaccatccgccgcaacgtgccggtggtggaggaccacccgtaccgctcgggccagccc
gcgccgcgtccggtgagccacgccacgggcgccgcgccggaggcccgtgcttcgggcaat
gggggccgtccccagggcgcgccgcgtccggccggcaacggcggtgggggtggcgggcac
tcggcgggcgcctcgcgtcgtcgccgcggtggccgggggggggggctggcggaggccgtg
gacagggccgccccgagggcggccgctcggcgcagggcgctggtggctccggcggcaatg
gcggtcggggtggccagggtggctcccggggctccggcggtggccgtcccgcgggtgcgg
tggcgcagggccccgcgaaggcgcccgaggccccgccgctgcctccgcgccggccgtcgc
cgaagtggttctgagcggctgagtcccgcgggcgggttgggccgcccttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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