KEGG   Magnetococcus marinus: Mmc1_0277
Entry
Mmc1_0277         CDS       T00427                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
mgm  Magnetococcus marinus
Pathway
mgm02024  Quorum sensing
mgm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mgm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Mmc1_0277
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Mmc1_0277
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mgm03019]
    Mmc1_0277
   03036 Chromosome and associated proteins [BR:mgm03036]
    Mmc1_0277
Messenger RNA biogenesis [BR:mgm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     Mmc1_0277
Chromosome and associated proteins [BR:mgm03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    Mmc1_0277
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: ABK42804
UniProt: A0L4B1
Position
314696..314953
AA seq 85 aa
MGNSHAGHNVQDPFLNTLRREKVPVTVFLVNGIKLQGMITSFDNYCLLLKNSVTQLVFKH
AISTVMPSRNIHMGDERDDAKESKE
NT seq 258 nt   +upstreamnt  +downstreamnt
atgggtaatagccatgctggacacaatgtacaggacccgtttttgaacacactacgtcgg
gagaaggtgccggttacggtgtttttggttaacggtattaaattacaggggatgatcacc
tcctttgacaactattgcctactgctgaaaaacagtgtgacgcagttggtgttcaagcat
gccatatcaacggttatgccatcgcgcaacatccatatgggtgatgagcgtgatgatgct
aaagagagtaaggaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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