KEGG   Mannheimia haemolytica D174: J451_07035
Entry
J451_07035        CDS       T02748                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
mhao  Mannheimia haemolytica D174
Pathway
mhao03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mhao00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    J451_07035
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mhao03021]
    J451_07035
   03400 DNA repair and recombination proteins [BR:mhao03400]
    J451_07035
Enzymes [BR:mhao01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     J451_07035
Transcription machinery [BR:mhao03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     J451_07035
DNA repair and recombination proteins [BR:mhao03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      J451_07035
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C
Other DBs
NCBI-ProteinID: AGQ41234
Position
complement(1360605..1364888)
AA seq 1427 aa
MKDLVKFLKAQTKSNEDFDVIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELACPVAHIWFLKS
LPSRIGLILDMPLRDIERVLYFESYVVTEPGMTDLEKNQLLTEEQFMDAEERWGDEFEAK
MGAEGIQALLRDLDLEHQCETLREELQETNSETKRKKITKRLKTLEAFLQSGNKPEWMVM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLVAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLRLHQCGLPKKMALELFRPFIYSKLENRGIASTIKAAKKMVEREDPIVWDILAEVIREH
PILLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNVLSPASGDPIIVPSQDVVLGLYYMTREKVNGKGEGMYFLDPREAEKAYRT
GQAELHSRVKVRVTEYEKNEAGELEAKTSLVDTTIGRSILWMIAPKGMPFSLFNQTLGKK
AISKLINESYRRLGLKESVVLADQIMYTGFAYAARSGASVGIDDMVIPEQKYAIIEAAEA
EVAEIQEQFNGGLVTAGERYNKVIDIWAAANERVAKAMMENLSTEEVINREGNPEKQASF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVIIEDDCGTHEGIVMTPLIEGGDVKEALRDRV
LGRVVAEDVLKPGTDEVLIPRNTLLDEKWCDVVDRESVDVIKVRSVVTCDTDFGVCAKCY
GRDLARGHLINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSIQVKNAGTIK
LTNAKFVTNKEGKIVLTSRNTELTVIDTFGRTKENYKVPYGAVLSKHDGAEVAVGEVVAN
WDPHTMPVISEVSGRIQFSDIVDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPALR
LVDSNGKDILIPGTDVAAQYFLPGKAIVTLDDGAEIEVGEALARIPQESVGTKDITGGLP
RVADLFEARKPKEPAILAEISGIVSFGKETKGKRRLVITPAEGEAFEEMIPKWRQLNVFE
GEMVQRGDVISDGAETPHDILRLRGVHAVTDYIVNEVQEVYRLQGVKINDKHIEVIVRQM
LRKAVITNAYDSEFLEGEQVEVARVKIANRKRAEEGKPLVEFERELLGITKASLATESFI
SAASFQETTRVLTEAAVAGKQDELRGLKENVIVGRLIPAGTGFAYHQARAKKRAQLEAGI
AVVPEFEAPAAKANSFVTDADIEAEFEFVADDATQSLAALLNAGEEE
NT seq 4284 nt   +upstreamnt  +downstreamnt
gtgaaagacttagtgaagtttttaaaagcacaaacaaaatcgaacgaagattttgatgtg
attaaaattggtttagcatcaccggacaagatccgttcttggtcttttggtgaagtgaaa
aaaccggaaaccattaactatcgtaccttcaaaccggagcgtgatggtttattctgtgca
cgtattttcgggccggtaaaagattacgagtgcttgtgtgggaaatacaaacgtttaaaa
caccgtggcgtaatttgtgaaaaatgtggtgttgaagtaacccaaactaaagtacgtcgt
gagcgtatggggcacattgaattagcttgccctgtcgcacacatctggttcttaaaatca
ctaccgtcccgtatcggtttaatcttagatatgccgttgcgtgatattgaacgtgtgctt
tattttgaatcttatgtagttactgaaccgggaatgaccgatttagagaaaaatcagtta
ttaaccgaagaacaatttatggacgctgaagagcgttggggtgatgaatttgaagcgaaa
atgggtgcagaaggtatccaagcattacttcgtgatttagatttagaacaccaatgcgaa
accttgcgtgaagagttacaagaaaccaattcagaaaccaagcgtaaaaaaatcactaag
cgtttaaaaaccttagaagcattcttacaatccggcaacaaaccggaatggatggtgatg
acagtattaccggtacttccaccggatttacgtccgttagtaccgcttgacggtggacgt
tttgcgacttctgacttaaacgatttataccgccgtgtaattaaccgtaacaaccgttta
aaacgcttgttagatttagttgcaccggacatcatcgtgcgtaacgaaaaacgtatgtta
caagagtcggttgatgcgttattagacaacggtcgccgtggtcgtgcgattaccggttcg
aacaaacgtccgttaaaatctttggcagatatgatcaaaggtaaacaaggtcgtttccgt
caaaacttattaggtaaacgtgtagattactcaggtcgttcggtaattaccgtaggccca
tacttacgcttacaccaatgtggtttaccgaagaaaatggcgttggaattattccgtccg
tttatctactcaaaattagaaaaccgtggcattgcttcaactattaaagccgcgaagaaa
atggtagagcgtgaagatcctatcgtatgggatattcttgccgaagtgattcgtgaacac
ccgattctacttaaccgtgcaccaacacttcaccgtttaggtatccaagcgtttgagccg
ttattgattgaaggtaaagcgatccagttacacccactcgtgtgtgcggcgttcaatgcg
gacttcgacggtgaccaaatggcggttcacgttccattaacccttgaagcacagttagaa
gctcgtgcgttaatgatgtcaaccaacaacgtactttcaccggcaagtggtgatccgatt
atcgtaccgtctcaggacgttgtactcggtctttactatatgacccgtgagaaagtaaac
ggtaaaggtgagggaatgtacttccttgaccctcgtgaagcggaaaaagcataccgtacc
ggtcaggctgaattacattctcgtgttaaagtgcgtgttactgaatatgagaaaaacgaa
gcaggcgaattagaagcaaaaacttcgttagtagataccaccattggtcgttcaatctta
tggatgattgcaccaaaaggtatgccgtttagcttgttcaaccaaaccttaggcaaaaaa
gcgatctcgaaattaattaacgagagctatcgccgtttaggtttaaaagaatctgtggtt
ttagctgaccaaattatgtacaccggctttgcttatgctgctcgttctggtgcctcagta
ggtatcgacgatatggtaattccggagcaaaaatacgcaatcattgaagcggctgaagcg
gaagtcgctgagatccaagagcaattcaacggcggtttagtaacagccggtgagcgttat
aacaaagtgatcgatatttgggctgctgcaaacgaacgtgttgcgaaagcaatgatggaa
aacctttcaacggaagaagtaatcaaccgtgaaggtaatccggaaaaacaagcctcattt
aacagtatctttatgatggcggactccggtgctcgtggttctgctgcacagattcgtcag
ttagcgggtatgcgtggcttgatggctcgtccggacggttcgattatcgaaaccccaatt
actgcaaacttccgtgaaggtttgaacgtattacagtactttatttcaacccacggtgca
cgtaaaggtcttgccgatacggcattaaaaacagcgaactccggttacttaacccgtcgt
ttagttgatgtggcacaagatttagttatcattgaagatgactgtggtacgcacgaaggt
atcgtgatgacaccacttatcgaaggtggtgatgtgaaagaagccctgcgtgatcgtgta
ttaggtcgtgtggtggcagaagatgtgttaaaaccgggtacagatgaagtattaattcca
cgcaacaccttattagatgaaaaatggtgtgatgtggtggatcgtgaatctgtggatgtg
atcaaagtacgttcggtagtaacttgtgatacagacttcggtgtgtgtgctaaatgttac
ggacgtgacttggctcgtggtcacttaatcaaccaaggtgaagcggtcggtgttattgcg
gcacaatctatcggtgagccgggtacacagttaacgatgcgtacgttccatatcggtggt
gcggcttctgcggcagcaaaagaatctagcatccaagtgaaaaacgcaggtacgattaaa
ttaaccaacgctaaatttgtaaccaacaaagaaggcaaaatcgtattaacttctcgtaat
actgaattaactgtcatcgacaccttcggtcgtaccaaagaaaactataaagtgccttat
ggtgcggtgctttctaaacacgacggtgcagaagtggctgtgggtgaagtggttgcgaac
tgggatccgcacacaatgccggtaatctcagaggtatcaggtcgtatccaatttagcgac
atcgtagatggcttaaccgttactcgccaaaccgatgaattaaccggtttatcatctatc
gtggtgcaagatgtgggtgaacgtgcaaccgcaggtaaagatttacgtccggcattacgc
ttagttgatagcaacggcaaagacatcttaattccgggtacagacgttgcagcacaatac
ttcttaccgggtaaagcaatcgtaaccttagacgatggtgcagaaattgaagtcggtgaa
gccttagcccgtattccacaagaatctgtggggacgaaagatattaccggtggtcttcca
cgcgtagcagacttattcgaagcccgtaaaccgaaagagccggcaatcttggcggaaatt
tcaggtattgtgtcgttcggtaaagaaaccaaaggtaaacgccgcttggtaattactccg
gcggaaggcgaagcgtttgaagagatgattccaaaatggcgtcagctcaacgtatttgaa
ggcgagatggtacaacgtggtgatgtgatatcagacggtgcagaaactccgcacgacatc
ttacgcttacgtggcgttcacgccgttaccgactacatcgtaaacgaagtgcaagaagtt
taccgcttacaaggggtaaaaattaacgacaagcacatcgaagtgattgttcgccaaatg
ttgcgtaaagctgtgatcaccaacgcttacgactctgaattcttagagggcgaacaagtg
gaagtggctcgtgtgaaaattgccaaccgcaaacgtgctgaagaaggcaaaccgttggta
gaatttgaacgtgaattgcttggtattaccaaagcatctcttgcaacagaaagctttatt
tctgcagcctcgttccaagaaaccactcgagtgcttaccgaagccgcagtggcaggtaaa
caagatgaattgcgtggcttaaaagagaacgtaatcgttggtcgcttaatcccggcaggt
accggttttgcttaccaccaagcacgagctaaaaaacgtgcccaactggaagcaggaatt
gcagttgtccctgaatttgaagcaccggcagctaaagccaattcattcgttaccgatgca
gacatcgaagctgaatttgaatttgttgcagacgatgcaacccaaagtttagcagcgttg
ttaaatgcgggtgaggaagagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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