KEGG T05471: DFR87

Metallosphaera hakonensis JCM 8857 = DSM 7519: DFR87_09900

Entry

DFR87_09900       CDS       T05471

Name

(GenBank) RNA-splicing ligase RtcB

K14415

tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]

Organism

mhk Metallosphaera hakonensis JCM 8857 = DSM 7519

Brite

KEGG Orthology (KO) [BR:mhk00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:mhk03016]
    DFR87_09900
Enzymes [BR:mhk01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     DFR87_09900
Transfer RNA biogenesis [BR:mhk03016]
Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    DFR87_09900
Prokaryotic type
   tRNA splicing ligases
    DFR87_09900

SSDB

Motif

Pfam:

RtcB

Other DBs

NCBI-ProteinID:

AWS00674

UniProt:

A0A2U9IXE7

Position

complement(1924017..1925459)

AA seq 480 aa
MDISIKRVNSFEWRIDKNGCMRVPVTVFADDVLIEKMKQDLTLKQATNVACLPGVQESVY
VLPDGHQGYGFPIGGIAATSIDEDGVVSPGGIGYDINCGVRLLRTNLDFSEVKPKLVDLV
EELHRTVPSGVGSEGRVKLSSQELDNLLQEGVKWAVEKGYGWAEDMNNIEQRGSWELADP
SKVSQVAKQRGASQLGTLGAGNHFLEVQVVDKIYDERIAKALGVTREGQITVMVHTGSRG
LGHQVASDYLQIMERAMKKYGVEVPDRELAAIPFNSREGQDYFRAMVAGANFAWSNRQLI
TNWVRESFGRVFKTDPEKLDLHIIYDVAHNIAKIEEYDIGGKRKKVLVHRKGATRAFPPG
SPEIPQEHRDIGQVVLIPGSMGTASYVMAGIPEGRRSWFTAPHGAGRWMSREAAVRNYPA
NSVVGSLEERGIIVRAATRRVIAEEAPGAYKDVDRVARVAHEVKIAKLVMRLRPIGVTKG

NT seq 1443 nt +upstreamnt +downstreamnt
atggatatttctatcaagcgtgtcaattcctttgagtggaggatagataagaacggttgc
atgagggttcctgtgacggttttcgcagatgacgtgctcatagagaaaatgaaacaggac
ttgacccttaagcaggcaactaacgtggcttgtcttcccggcgttcaggaatcggtgtac
gtattgccagacggtcatcaaggatacggctttcccatagggggcattgcggcaacgtca
atagacgaagacggcgtggtgagccctgggggaataggttacgacataaactgtggagtt
agactacttagaactaacctggatttctctgaggtgaagcctaagttagttgacttagtc
gaggagcttcataggaccgtcccaagcggggtgggaagtgagggaagagtcaagctgtct
tctcaagagctcgataatttacttcaagagggagttaagtgggcagtggagaagggctac
ggttgggcggaggacatgaacaatattgagcagagaggtagttgggaattagcggatccc
agtaaggtgagccaggtagctaaacagaggggcgcgtctcaattgggaacccttggagca
ggaaaccatttccttgaggtccaggtggttgacaagatatatgatgagaggatagctaaa
gcgttgggggtaactagggaaggtcagatcacggtcatggtgcacacgggctccaggggt
ctcgggcatcaagtcgccagtgattacctgcagataatggagagggccatgaagaagtac
ggggtggaggtgcccgatagggaattggccgcaattccctttaatagcagggagggccag
gactactttagagccatggtagccggtgcaaacttcgcgtggagtaacaggcaattgata
accaattgggtcagagagagctttgggagggtgttcaagaccgatccagagaaactcgat
cttcacatcatttacgatgtggcccataacatagctaagatagaggagtacgatataggc
ggaaagagaaaaaaggttctggttcaccgtaagggcgccactagagcgtttccaccgggt
agtcctgagataccccaggaacatagggacataggccaagtggttctaattccgggaagt
atgggaactgccagttacgtaatggcaggaattccagaggggagacggtcttggttcact
gcaccacatggggcaggcagatggatgtcgagggaggctgcggtgaggaattatccagca
aactcagtggttggatcgttggaggaaagggggataatagtcagggctgctacacggagg
gttatagccgaggaggcgcctggagcctataaggacgtggatagggtagccagagtggca
catgaggtgaagatcgctaagcttgtcatgaggctgagacccatcggggtgaccaagggt
tga

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (10)   

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