KEGG   Methanosarcina horonobensis: MSHOH_3135
Entry
MSHOH_3135        CDS       T03933                                 
Name
(GenBank) DNA double-strand break repair Rad50 ATPase
  KO
K03546  DNA repair protein SbcC/Rad50
Organism
mhor  Methanosarcina horonobensis
Brite
KEGG Orthology (KO) [BR:mhor00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mhor03400]
    MSHOH_3135
DNA repair and recombination proteins [BR:mhor03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     MSHOH_3135
    Archaeal homologous recombinant proteins
     MSHOH_3135
SSDB
Motif
Pfam: SMC_N AAA_21 AAA_29 AAA_15 SbcC_Walker_B ABC_tran
Other DBs
NCBI-ProteinID: AKB79618
UniProt: A0A0E3SI73
Position
complement(3842579..3845791)
AA seq 1070 aa
MKLKNLYIENIRSYKKLDFTFEDGVTVISGVNGSGKSSLLEACFMGLFGSKILSKDFVLA
DMIFKGAENAKINLGFEHLGGEYLLEQVFRYSSKSENALSSRCVLFADGENIVDQATRTY
EEICALLNMDEEAYRNCAYIRQGEIDVLINAKPKDRQRMIDDLLQLGKLEEYRERAGYAK
TAVRRLERDAKNSFSGVKVEIEGIESTEPVAAVNRLRQKVKETDSILEDLSKKKEFAAAR
KGELDLKIAEYRERLQEIEALKQAIHKSKEDKAGCFKEKEAFSGEVQVQRRVLLELGEEN
VGLREECGFRDLEIEALLLRQEKEESSSREKVNSVSKELALLLKEEETGVQALSELEKEK
AETERTLIECRNSIGTANKEIEGYRANIKQLEEDNKGLREKAGFGAVEEVISIIKELEEK
ESLLRDRKNEVSTKLSLVLKEKETLDKGLRELDVEMQNCHSAVCKGSTEIEALEQELRDN
SKAVLDIQEQKSEVFAGLKALGFTGGQLENLEDFNELLLENKNRLHGKEKELEATLREIE
NSLRKNRELLAEGKCPTCGQELKGSEVACTAEECEQKKEKLASELADIKLQNTELEKKLN
RLKDAKKLEKQASDYDIEIEKLAEKARASKKLIETHRDRIEEDSLKLENLDKRKQELETA
MSQIVSDIKALKDQEEEAQKAHDEGEKALREAKVFERKLAENASEIESLNGKIRTSLALI
ENYGQRLEELNEKLKTFTEKESLSKEKLEALELALEAVRKKEDEAKKAHVESERLLLQAK
KLQANLLRMENIKHKISELETGIRNLAEKIGFFDREILERSDRIRQLQEKLEGNRLAELQ
QKRVQFEEAHANITEKTREVTAEKDTFLKEIGMIENSLKRLRELKEELRALENKRLYLEA
VYNNADELENTYLRVRADMRARNIGALSILLNEMFGFMYTNNAYSHIELDPEYNLTVYRK
DGTPLEPKLLSGGERAIFNLVLRCAIYRLLALGFGGDKPDGLPPMILDEPTVFLDRGHVR
QLLKLIDMMRSIGVGQIIVVSHDESLIDSADHVFQVEKDPITNMSSITRI
NT seq 3213 nt   +upstreamnt  +downstreamnt
gtgaagctaaaaaacctgtacatagaaaatatccggagctataaaaagctggacttcact
ttcgaagacggagtgaccgtgatctccggagtaaacggtagtgggaaatcaagcctgctc
gaagcctgcttcatggggcttttcgggagtaagatcctctcaaaggactttgtgcttgct
gatatgattttcaagggagctgagaatgcaaaaatcaacctcggttttgagcaccttggg
ggggagtacctccttgagcaggttttcaggtactcttcgaaaagtgaaaatgctttaagc
tcaagatgtgtgctttttgctgatggggaaaacatcgttgaccaggcaacccgcacctat
gaagagatatgtgccctcctgaacatggacgaagaagcatacaggaactgcgcatacatc
cggcagggtgaaattgacgtacttattaatgcaaagccaaaggacaggcagcgcatgatt
gacgacctgcttcagcttggaaagctcgaggagtaccgtgaaagggcaggatatgctaag
acggctgtcagaaggcttgaaagagatgcaaaaaatagcttttcgggagtgaaagtcgaa
atagagggaattgaaagcacagagcctgttgcagccgttaacaggctcaggcaaaaggta
aaagaaactgactcaatcctggaagatctcagtaagaagaaagaatttgcagctgcacgt
aaaggagaactcgaccttaaaattgccgagtatagggaacgcctgcaggaaattgaagct
ttgaaacaggctatccataagtctaaggaggataaggctggttgctttaaagaaaaagag
gccttttcaggggaagtccaggttcaaaggcgcgttttgcttgaactcggggaagaaaac
gtcggcttgagagaagagtgcggttttagagatctcgaaatcgaggctctgcttttgcga
caggaaaaagaggaatcttcttccagggagaaagtaaattcagtatcaaaagaacttgct
cttctcctgaaagaagaagaaaccggtgtacaggcattgagtgagcttgaaaaggagaag
gctgagactgagcgcactcttattgaatgcagaaatagtattggaactgcaaataaggaa
attgaagggtacagggcaaatataaagcagctcgaagaggacaataaagggctgagagaa
aaagcaggctttggggctgttgaggaagtcatttcaattataaaagaacttgaagaaaag
gaaagcctcctcagagaccggaaaaatgaggtttcgacaaaacttagtcttgttcttaaa
gaaaaagaaaccctggataaaggcttgcgcgagcttgatgtggaaatgcaaaactgccat
tctgcagtctgtaaaggaagtactgagattgaggcgcttgagcaggaactcagggacaac
tcaaaagcagtactggatatccaggagcagaagtccgaagtttttgcggggctaaaggct
ctcggcttcactgggggccagctcgaaaatcttgaggatttcaacgagcttctgctggag
aataaaaaccggcttcatggaaaagaaaaggaacttgaggctactttaagggaaattgaa
aacagcctccgtaaaaaccgggaactgcttgccgaaggaaaatgtcctacctgcgggcag
gaattgaaaggatcggaagtcgcatgtacagcagaggaatgcgagcaaaaaaaagaaaag
cttgcctcggagcttgcggacataaaactgcaaaacactgaacttgagaaaaagctcaac
cggctaaaggatgcaaagaagcttgagaaacaggcctctgattatgatatcgaaatcgaa
aagctcgctgaaaaggcaagagcttccaagaaactgatagagactcatagagaccggata
gaagaagactctctgaaacttgagaacctcgataaacggaaacaggaacttgagactgca
atgagccagattgtttcagatattaaagctctgaaagatcaggaagaagaagctcaaaaa
gctcatgatgagggtgaaaaagctctcagggaggcaaaagtttttgaaagaaagcttgcc
gaaaacgcctctgaaatcgaatctctaaatggtaaaatccgaacatctcttgcgcttatc
gaaaattacgggcaaaggcttgaagagctcaatgaaaaattaaaaacgtttacagaaaag
gaatccctgtcaaaagaaaaactcgaagctctcgaactcgcccttgaagctgtgcggaaa
aaagaagatgaagcaaaaaaagcccatgtcgaaagcgaaaggcttcttttgcaggcaaaa
aaacttcaggctaacctgctccgtatggaaaacatcaaacataagatctccgagcttgag
accggtatcagaaatctggcagaaaaaatcggtttctttgaccgcgaaatccttgaacgc
agcgacaggataaggcagctgcaagaaaaactggaaggaaacaggcttgcagaactccag
caaaaacgtgttcagtttgaagaagcacatgcaaatattacggagaaaacccgggaagta
actgccgaaaaggatacttttcttaaagaaatcggcatgatcgaaaatagcttaaaacgt
ttgagggaactcaaagaagaactgagagctcttgaaaacaaaaggctgtatcttgaagcc
gtatataataatgctgatgagcttgaaaatacctatctgcgcgtccgggctgatatgcga
gcaaggaacataggcgctctttccatcctcttaaatgagatgttcggttttatgtacaca
aacaacgcttattcccatatcgagcttgacccggaatacaatttgacggtctatagaaaa
gacggcacgcctctcgagcccaaacttttgagcggaggcgaacgtgcaattttcaatctt
gtccttcgctgtgccatctaccggcttcttgcccttggctttggcggagataaaccggac
ggacttcctccaatgatccttgatgagcccacagttttcctggaccgcgggcatgtcagg
cagcttctgaaactcatagatatgatgcgcagtatcggagtagggcagattatagtggtc
tctcatgatgagtccctgatcgattcggcagatcacgtcttccaggtagaaaaagatccc
attacaaatatgtcctcaattacaaggatttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (13)   

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