KEGG   Microbacterium hominis: CXR34_09005
Entry
CXR34_09005       CDS       T05238                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
mhos  Microbacterium hominis
Pathway
mhos03030  DNA replication
mhos03410  Base excision repair
mhos03420  Nucleotide excision repair
mhos03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mhos00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CXR34_09005
   03410 Base excision repair
    CXR34_09005
   03420 Nucleotide excision repair
    CXR34_09005
   03430 Mismatch repair
    CXR34_09005
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mhos03032]
    CXR34_09005
   03400 DNA repair and recombination proteins [BR:mhos03400]
    CXR34_09005
Enzymes [BR:mhos01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     CXR34_09005
DNA replication proteins [BR:mhos03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     CXR34_09005
DNA repair and recombination proteins [BR:mhos03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     CXR34_09005
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     CXR34_09005
   MMR (mismatch excision repair)
    DNA ligase
     CXR34_09005
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      CXR34_09005
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 PTCB-BRCT HHH_5 BRCT_2 HHH
Other DBs
NCBI-ProteinID: AUG31159
UniProt: A0A2K9DJG9
Position
1864354..1866360
AA seq 668 aa
MNAFHERSDYTAAVERAVQAAGAYYDGYTPMMTDAEYDELLAGIQAYERENPDHVVEHGL
FTVVAAGVGPAGDVPHPTPMLSLEKVKSEADIRRLLERVMDVSGGHESTLVSVQPKLDGI
AIRAIYSDAKLAQVVTRGDGQAGEDVTERVLREGVIVNGLPEFIGTSAPVGFEVRGELVM
TVDDFARSNANRIASGKVGFANPRNAAAGSVRAETLGYEVQMTFVTYEHDGIPADSAAAD
AFIYADQLPGAKTASARQYRGVIMALEEFGAMRAEYSYPTDGAVIKAIDPAVRSRMGSGS
RSPKWAVAYKYEAQTGETTIRDILVEVGRTGNLSFTAVFDPVLVDGSTISRASLHNTSLI
AEKDIRIGSKATVYKANDIIPQVLSVTNDETTVPWAPPTEDADGFPYVQRGKFLTSTNPA
ESVGALIRYAASRDVLDIDGLGSEIADALVDGNRVERLDHLFTLTEEQLANLPMGETSTG
AVRRLGVANAAKVYANIQRAKSQPLNRVITALGVRMTGRTFGRRLAAHFRSLDALLAATP
NDLQRVEGIAAGRAEVIYAGVQKNRTVIENLIDLGVASEAETPAAGADLLTGLSVVVTGS
TKGTKLEAYGRNEMNELIERHGGKSSGSVSKNTSLLVAGDGAGSKLAKAQELGIETITPD
EFAERIGL
NT seq 2007 nt   +upstreamnt  +downstreamnt
atgaacgccttccacgaacgctctgactacaccgccgccgtcgaacgtgccgtccaggcc
gccggcgcctactacgacggctacacgccgatgatgacggacgccgagtatgacgagctc
cttgcgggcatccaggcttacgagcgtgagaacccggaccacgtcgtggagcatgggctt
ttcaccgtggtcgcggcgggggtcggtccggccggagatgtcccgcacccgaccccgatg
ctctctctcgagaaggtcaagagcgaagccgacatccggaggctcctcgagcgcgtcatg
gacgtctccggtggccacgagtccacgctggtgtcggttcagcccaagctggacgggatc
gccatccgggccatctacagcgatgcgaagcttgctcaggtagtcacccgtggggacggg
caagctggagaagacgtgaccgaacgcgtcctccgagagggcgtgatcgtgaatgggctt
ccggagttcatcggcacgagcgcgccggtcggtttcgaggttcgcggtgagctcgtcatg
acggtcgatgatttcgcccgatccaacgccaatcgcatcgcgtctgggaaggtgggattc
gccaacccccgtaacgcggcggccggatccgtccgtgcggagaccctcggctacgaggtc
cagatgaccttcgtcacctacgagcatgacggtatcccggcagactccgccgccgccgat
gcgttcatctacgctgatcaactgcccggcgccaagaccgccagcgcacgacagtatcgc
ggcgtcatcatggcgttggaggagttcggcgcgatgcgagctgagtacagctacccgacc
gacggtgccgtgatcaaggccatcgacccggccgttcgatcccggatgggcagcggttca
cgctcgccgaagtgggcagtcgcgtacaagtacgaggcgcagacgggagagaccacgatc
cgcgacatcctcgtggaggtgggccgcaccggcaacctctcgttcactgctgtgttcgac
ccggtccttgtggacggctccacgatcagccgcgcctcgttgcacaacacttcgctcatc
gcagagaaggacatccgaatcggctcgaaggcgaccgtctacaaagcgaacgacatcatc
cctcaggttctctctgtcaccaatgacgagaccaccgttccgtgggctccgccgaccgag
gacgccgatggtttcccatatgtgcagcgcggcaagttcctcacctccaccaatcctgct
gagtcggttggcgcgctcatccgctacgctgcgtcgcgcgacgtccttgacatcgacgga
ctcggctccgagatcgccgatgccctcgtcgatggcaaccgtgttgagcggcttgaccac
ctcttcaccctgacggaagagcagctcgcgaatctgccgatgggtgagacttccactggc
gccgtacgcagactcggagtggcaaacgccgcgaaggtctacgcgaacatccagcgagcg
aagtcgcagcctctgaatcgcgtcataactgccctcggcgtccgcatgaccggacgaacg
tttgggcgtcgtctcgcagctcacttccgcagcctcgacgcactgctcgccgcgacgccc
aacgacctccaacgggtcgaggggatcgccgctggccgggccgaagtgatctacgcaggt
gtgcagaagaaccgaacggtcatcgagaacctcatcgacctcggtgtggcttccgaagct
gagaccccagctgccggcgccgacctgctcaccgggctctccgttgtcgtcacagggtcc
acgaagggcacgaagctcgaagcatacggtcggaacgagatgaacgagctcatcgaacgt
cacggcggcaagtcctccggttcggtgtcgaagaacacgtccctcctcgtcgcaggggac
ggcgctggctcgaagctcgccaaggcacaggaactcggcatcgagacaatcacgccggac
gagttcgcagagaggatcgggttgtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (28)   

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