KEGG   Allocoleopsis franciscana: Mic7113_3809
Entry
Mic7113_3809      CDS       T02374                                 
Name
(GenBank) VacB/RNase II-like 3'-5' exoribonuclease
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
mic  Allocoleopsis franciscana
Pathway
mic03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mic00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Mic7113_3809
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mic03019]
    Mic7113_3809
   03016 Transfer RNA biogenesis [BR:mic03016]
    Mic7113_3809
Enzymes [BR:mic01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     Mic7113_3809
Messenger RNA biogenesis [BR:mic03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Mic7113_3809
Transfer RNA biogenesis [BR:mic03016]
 Prokaryotic type
  tRNA degradation factors
   Mic7113_3809
SSDB
Motif
Pfam: RNB OB_RNB CSD2 S1 RNase_II_C_S1 OB_Dis3
Other DBs
NCBI-ProteinID: AFZ19526
UniProt: K9WI93
Position
complement(4419470..4421719)
AA seq 749 aa
MEFSIATLLSNFTDEKSVAPKNLEKKLGCQDEENLEKLQIALDALEKIGVLVKERGRYRR
IYEEDVVEAKLRCSSKGFCFAIQDVEGADDIYIQKSHLSTAWNGDRVLVKITKEGSRRRS
PEGQVKLILERANPSVLARVRRTNSSFQAVPLDDRLLFELDLKPNHENLEEAIDHLVHVE
VLRYPLGHNNPIGKVARVLGSDAEDAADTDIVCCKHDLRRNFPPNALKAAEEIPKQLRKA
DLKKRLDLRERLTLAIEGEQPSDSGVVENAFTLEKTKTGYWELGVHIADVASFIPMDSPL
DREARKRCTAVYLGDLVLPLLPETVQERCSLVPGEDRLAISVMLTLNEEGELVEFEIHPS
VIRVDHQLSYAQAQSLLGEHQEADPELASGLEMLKHVFFELSPAVRTQRQQRGAFDLNVS
ETQYPFKDEGRMGAIILSSTLPVRSLLMELTILANQAVASHLQALALPAIYCVQPIPDLD
ELQDLIKLGNNLHLDMQMDEEEDVTSQDYQRFTQLFAKSTAPKVLNYLLQSTLKLAGYSS
KPGVHFGLALDKGYTHCVSPLRRYGDLFVQRVLLELFEKGRDRRSTRSKDRVNLNHSSSH
GNVNWNILPPDIQQELETEVTILVPHLNDREKLAQDAEVDLQGLKKAEQMKERTGDVFSG
LITGVQSYGFFVEIEDLLVEGLVHVSSLKDDWYEYRSRHACLVGRKNRTAYRLGDRVEVQ
VKSVDYYRQQIDLVTVGGGSVAFNEDLEE
NT seq 2250 nt   +upstreamnt  +downstreamnt
atggaattttcaatcgctacattactttccaatttcaccgatgaaaaatcagtggctccc
aagaatttggaaaaaaagctgggttgccaggacgaagaaaatctggaaaaactccaaatt
gctctggatgctctagaaaaaataggagttttggtcaaagaacgtggcaggtatcgacgc
atctatgaagaagatgtggttgaagccaagctgcgctgttcgagtaagggattttgcttc
gcgattcaagatgtagagggcgcggatgatatttatatccaaaaaagccatttgagtacc
gcctggaatggcgatcgcgttctggtcaaaatcaccaaagaaggtagccgccgtcgtagt
cccgaagggcaggtaaagttaatcttagaacgagccaatccttcggtcctggcaagagtc
cggcgcaccaatagcagctttcaagcggttcccctagatgaccgactgttgtttgaactc
gacctcaagcctaatcacgaaaatctagaagaagcgatcgatcatctggttcatgtcgaa
gtgttacgctaccccctaggacacaataacccaattggtaaggtagcacgcgtcctagga
agtgacgccgaagacgcggctgacacggatatcgtgtgttgtaagcacgatttgcgccgc
aactttccccccaacgcgctgaaagccgctgaggagatacccaaacaactccgcaaggca
gacttaaaaaagcgtctggatttacgggagcgtctgacgttggcgattgagggagagcaa
cccagcgacagtggtgtggttgagaatgccttcaccttggaaaaaacgaagacgggatac
tgggagttgggtgtccatatcgcagatgtcgccagctttattcccatggactccccattg
gatcgagaagccagaaagcgctgtacagcggtttatttgggagatctggtgctgccccta
ctcccagagaccgtgcaagaacgttgctccttagtgcccggtgaagaccgtttggctatt
tcggttatgctcaccctgaacgaagagggtgaattggtggagtttgaaattcacccttct
gtgattcgggtagaccatcagctaagttatgctcaagcacagtcgctgttaggagaacat
caagaagctgaccccgaattggcttcgggattagaaatgctcaagcacgtgttttttgaa
ctcagtccggcggttcgcacgcaacggcaacaacggggtgcttttgacttaaatgtatcg
gaaacgcagtatccctttaaagatgaagggcgcatgggagcgattatcctttcttccacg
ctgccggtacgctctttgttaatggaattaacgattttagccaaccaagcggttgcctcc
catttgcaagcgcttgccctacctgccatttactgtgtgcaaccgataccggatctcgat
gagcttcaggatttgattaagttgggcaacaatctccacctcgatatgcagatggatgag
gaggaggatgtgacttcccaggactatcaacgctttacccagttatttgccaaatcaacc
gctccaaaagtcctgaattatttattgcaatccacgttaaagctagctggctacagttct
aagcccggtgttcactttggtttagcgttggataaaggctatactcactgcgtctctccc
ctgcggcgttatggggatttgttcgtgcaacgggtgctgctggaattatttgagaaagga
cgcgatcgccgctccactcgttctaaagaccgtgtcaatcttaaccatagtagcagccac
ggcaatgtgaactggaatattttgccgcccgatatccagcaagagttagaaacagaggtc
acgatcttagtgcctcatctcaatgatcgggagaaactcgcccaggatgcggaagtggat
ttgcagggtttaaagaaagccgaacagatgaaagaacgcacaggagatgtgttcagtggg
ctgattacgggcgtccagtcctacggcttttttgtggaaattgaagaccttttggtcgaa
ggactcgttcacgttagttccctcaaagatgactggtacgagtatcgctctcgacacgcc
tgcctcgtgggccgaaaaaaccgcaccgcctatcgattgggcgatcgcgtggaagtccaa
gtcaagagcgttgattactaccgtcagcaaattgacctcgtcacggttgggggtggtagc
gttgcgtttaacgaagacttagaggagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (26)   

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