KEGG   Microbacterium sp. BH-3-3-3: BJP65_04050
Entry
BJP65_04050       CDS       T04827                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
mih  Microbacterium sp. BH-3-3-3
Pathway
mih03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mih00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BJP65_04050
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mih03021]
    BJP65_04050
   03019 Messenger RNA biogenesis [BR:mih03019]
    BJP65_04050
Transcription machinery [BR:mih03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     BJP65_04050
Messenger RNA biogenesis [BR:mih03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     BJP65_04050
SSDB
Motif
Pfam: ATP-synt_ab Rho_RNA_bind NACHT Spore_III_AA AAA_22
Other DBs
NCBI-ProteinID: AOX45076
Position
complement(857137..859434)
AA seq 765 aa
MESISETQPIDAPEGAETPAEEQPTAATPGTDTAQAEAVAETTDAEGVDAPDAAASAAAT
DAAQPEALFTDEALASDAPAAEAASDVAEPAAAEAPAAEAPAEEPAPVEKPARAPRKRAP
RRATTATAKEKAAAEAAAADEKAAADAAATEAPAVDEAAADAAVVEAPAAESVSDDAATT
PVTTAADVADEVAAAEATSTVEADAPTADAPVADAPAVDAPAVDEAADASTSDADGADQA
DETPARGRGRSRSRNRNRNKPDAADKPEAQTAAAPADEAEAPQQGGQRDNQRDGGQRDNQ
RDSNQRDNQREAGQRDNQRDSNQRDGNQRDAAQRDGNRQNGQQAQQQQDGTSNRNRQRNK
RRGQNTTGDEFETEIGEDDVLVPIAGVLDVLDNYAFVRTTGYLSGPSDVYVSLGQVKKYN
LRKGDAVVGAIKQPREGEQQGRQKYNALVQVDSINGLSVEDAATRVEFNNLTPLYPQERL
RLETGPEKLTQRIIDLVAPVGKGQRGLIVAPPKAGKTIVLQQIANAIATNNPEVHLMVVL
VDERPEEVTDMQRTVRGEVIASTFDRPAEDHTTVAELAIERAKRLVELGRDVVVLLDSIT
RLGRAYNLAAPTSGRVLSGGVDASALYPPKRFFGAARNIENGGSLTILATALVETGSKMD
DVIFEEFKGTGNSELRLNRQLADKRIFPAVDVNASSTRREEMLLSNDEVKITWKLRRALA
GLEPQQALEVVLGKLKETQSNVEFLVQMQKSIPAPARGGDDNSIR
NT seq 2298 nt   +upstreamnt  +downstreamnt
gtggagtccatctccgagacccagcccatcgacgcgcccgagggcgccgagacccccgcc
gaagagcagcccacggctgcgacgccgggcaccgacaccgcgcaggccgaggccgtcgcc
gagacgacggatgccgagggcgtcgacgctccggatgccgccgcctccgccgccgcgacc
gacgcggcgcagcccgaggcgctgttcaccgacgaggcgctcgcctcggacgcaccggcc
gccgaggccgcgtccgacgtcgcggagcccgccgccgccgaggcgcccgccgccgaagcg
ccggccgaagagcccgcgccggtcgagaagcccgcccgggcaccgcgcaagcgcgcaccc
cgccgcgcgacgacggccaccgccaaagagaaggccgccgccgaggccgctgcggccgac
gagaaggccgcggccgacgctgcagccaccgaagcccccgccgtcgacgaggccgcagcc
gacgctgcggtcgtcgaggcgcccgccgccgagtccgtctcggacgacgccgcgaccact
cccgtgaccaccgcggccgatgtcgccgacgaggtggccgctgccgaggcgacctcgacc
gtcgaggccgacgccccgaccgctgacgcgcccgtcgctgacgcacccgccgtcgacgcc
ccggccgtcgacgaggccgctgacgcgtccacctccgacgccgacggcgcagaccaggcc
gacgagacccccgcccgcggccgtggccgcagccggtcgcgcaaccgcaaccgcaacaag
cccgacgccgcggacaagcccgaggcgcagaccgcggccgcccccgccgacgaggccgag
gccccgcagcagggtggccagcgcgacaaccagcgtgacggtggtcagcgtgacaaccag
cgtgactcgaaccagcgtgacaaccagcgcgaggccgggcagcgcgacaaccagcgtgac
tcgaaccagcgtgacggcaaccagcgtgacgccgcccaacgtgacggcaaccgccagaac
ggccagcaggcccagcagcagcaggacggcacgagcaaccgcaaccgtcagcgcaacaag
cgccgcggccagaacaccacgggcgacgagttcgagaccgagatcggcgaggacgacgtg
ctcgttccgatcgccggtgtgctcgacgtgctcgacaactacgccttcgtgcgcacgacc
ggctacctctcgggcccgagcgacgtctacgtctcgctcggccaggtgaagaagtacaac
ctgcgcaagggcgacgccgtcgtcggcgcgatcaagcagccccgcgagggtgagcagcag
gggcgtcagaagtacaacgcgctcgtgcaggtcgactccatcaacggcctctcggtcgaa
gatgccgcgacgcgcgtcgagttcaacaacctcacgccgctctacccgcaggagcgcctg
cgcctcgagaccggccccgagaagctcacccagcgcatcatcgacctggtcgccccggtc
ggcaagggccagcgcggtctcatcgtggcgccgcccaaggccggcaagacgatcgttctg
cagcagatcgccaacgcgatcgccacgaacaaccccgaggtccacctcatggtcgtgctc
gtcgacgagcgccccgaagaggtcaccgacatgcagcggaccgtccgcggcgaggtcatc
gcctcgacgttcgaccgcccggccgaagaccacaccacggtcgccgagctcgccatcgag
cgcgccaagcgcctggtcgagctcggtcgcgacgtcgtcgtgctgctcgactcgatcacc
cgcctcggccgtgcgtacaacctcgccgcccccacctcgggccgcgtgctctccggtggc
gtcgacgcgtcggcgctgtacccgccgaagcgcttcttcggtgccgcgcgcaacatcgag
aacggcggatcgctcacgatcctcgccaccgcgctcgtcgagaccggctccaagatggat
gacgtgatcttcgaggagttcaagggcaccggcaacagcgagctgcgcctgaaccgtcag
ctcgccgacaagcgcatcttcccggcggtcgacgtcaacgcgtcgagcacgcgtcgcgaa
gagatgctcctgtcgaacgacgaggtcaagatcacctggaagctccgccgcgcgctggcc
ggtctcgagccccagcaggccctcgaggtcgtgctcggaaagctcaaagagacccagtcg
aacgtcgagttcctcgtgcagatgcagaagtcgatccccgcgcccgcgcgcggcggtgac
gacaacagcatccgctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (13)   

Download RDF
DBGET integrated database retrieval system