KEGG   Methylacidiphilum infernorum: Minf_2301
Entry
Minf_2301         CDS       T00727                                 
Symbol
ligT
Name
(GenBank) 2'-5' RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
min  Methylacidiphilum infernorum
Brite
KEGG Orthology (KO) [BR:min00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:min03016]
    Minf_2301 (ligT)
Enzymes [BR:min01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     Minf_2301 (ligT)
Transfer RNA biogenesis [BR:min03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    Minf_2301 (ligT)
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2 AKAP7_NLS
Other DBs
NCBI-ProteinID: ACD84355
UniProt: B3E0C6
Position
2138699..2139289
AA seq 196 aa
MDLKEEKKERFFFAFWPDSQRQSLLGRLREELFAGIQARAIPPEFLHLTVLFLGWTSPRS
IEEIVKELPGRLKTEGFPLFFQFSKAVFKRRGKEGIIWLEAVRVPPPAERLLQDLIQLMT
QKKLSFQAHSPFVPHITIFRHVLPQSLPENLAKRKEIELPAPFELGVDTLYLVRSELKAE
GSDYKKVFSFPLAQQN
NT seq 591 nt   +upstreamnt  +downstreamnt
atggatttaaaagaagaaaaaaaagaaaggtttttctttgctttttggcccgattctcag
cggcaatccctccttggccgactgcgagaagagctctttgccgggattcaagccagggct
atccccccggagtttctccacctgaccgttcttttcctgggatggacgtccccaaggagc
attgaagaaatcgtaaaggagcttcccggccggttaaaaaccgaaggatttccccttttt
ttccaattcagcaaagcggtcttcaagaggaggggcaaagaaggcattatttggcttgaa
gctgtccgcgtccctccgcccgccgaaaggctgcttcaagacttgatccagttgatgacc
caaaaaaagctttctttccaggcccatagtcctttcgttccccacatcacgatctttcgc
catgtccttccccaaagtcttcctgaaaacctggcgaaaagaaaagagatcgaactgccc
gccccctttgaactcggcgtggataccttgtacctggtccgctcggaactgaaagccgaa
ggaagcgattataaaaaagtcttttcttttcccctcgcccaacaaaattga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (8)   
   KEGG ORTHOLOGY (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (21)   

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