KEGG   Micromonas commoda: MICPUN_51830
Entry
MICPUN_51830      CDS       T02695                                 
Name
(RefSeq) predicted protein
  KO
K12820  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:5.6.2.6]
Organism
mis  Micromonas commoda
Pathway
mis03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mis00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    MICPUN_51830
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mis03041]
    MICPUN_51830
   03009 Ribosome biogenesis [BR:mis03009]
    MICPUN_51830
Enzymes [BR:mis01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     MICPUN_51830
Spliceosome [BR:mis03041]
 Complex A
  U2 snRNP components
   U2 related factors
    MICPUN_51830
 Complex B
    MICPUN_51830
 Complex C
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-SnRNP related factors
    MICPUN_51830
Ribosome biogenesis [BR:mis03009]
 Eukaryotic type
  90S particles
   Helicases
    MICPUN_51830
SSDB
Motif
Pfam: OB_NTP_bind HA2_C HA2_N Helicase_C DEAD AAA_22 ResIII
Other DBs
NCBI-GeneID: 8250249
NCBI-ProteinID: XP_002507713
JGI: MicpuN3_51830
UniProt: C1FEJ8
Position
1:complement(join(1689656..1690456,1690599..1691501))
AA seq 567 aa
MNIYWTVPTFRMLLREAMTDPLLNRYGVIIIDEAHERTLATDVLFGLLKEVLTKRTDLKV
VVMSATLEAEKFQNYFLEAPLMRVPGRLHPVEIFYTQNPERDYLEAAIRTAVQIHVCEPP
GDVLIFLTGEEEIEDACIKVRREIGSMGDRVGVVKVVPLYASLPPQQQQRIFDDAPPPRD
GPSGVPGRKIVISTNIAETSLTIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISRASAH
QRAGRAGRTRPGKCFRLYTEGSFKKDLQEQTYPEILRSNLGSVVLQLKKLGIDDLVHFDF
MDPPAPETLMRALELLNYLGALDDDGNLTQIGSVMSDFPLDPQLAKMVCASPQFRCSNEI
FTITSMLSVPNPFIRPRDQQSEADEAKSRFSHIDGDHLTLLNAYHAFKQNNEDSQWCYNN
YINYRAMKSADSVRSQLVRIASRFNMSLMSTDFTSRDYYLNIRRAILSGYFMQVAHLERQ
GSYLTVKDNQMVSLHPSTCLDHKPEWVMYNEFVLTTKNYIRICTEAKGDWLVEVAPHYYD
LTNFPECEAKRVLERICERSKTNYKRT
NT seq 1704 nt   +upstreamnt  +downstreamnt
atgaatatatattggaccgtccctacgtttaggatgcttctccgcgaggctatgacagac
ccattgctaaaccgatacggcgtcataatcatcgacgaggcgcatgaacgaacgctggcg
accgatgtgctgttcggtcttctgaaggaagtcctcactaagcggaccgatctcaaggtt
gtggtcatgtcagccacactagaggctgaaaaatttcagaattatttcctagaggcaccc
ttaatgcgagtgccgggacgactgcaccctgtggaaattttttacactcaaaaccctgaa
cgtgactacctcgaagctgcgattcgcacagctgttcaaatacatgtgtgcgaacctcca
ggtgatgtgctgatcttcctcacaggtgaagaagaaattgaagatgcctgcataaaagtg
aggcgtgaaatcgggagtatgggcgaccgcgtaggagtcgtgaaagtggttccgctgtat
gccagtttgccgccccaacagcaacagcgtatttttgatgatgcgcctccacctcgtgac
ggcccatcgggtgttccaggccggaaaattgtcatctctacaaatattgccgagacgtcg
ctcactattgacggaattgtgtatgtcatagaccctggcttcgcgaaacagaaggtctat
aatccgcgaatcagggtcgaatctcttcttgtatcaccgataagccgtgcctctgcgcac
cagcgcgcagggcgagctggtcgaacgcgtcctgggaaatgtttccgtctttacacagaa
ggatcgttcaaaaaagatttgcaagagcaaacctacccagagattcttcgctcgaacctt
ggttctgtcgtgctgcaactcaagaagcttggcatagacgacctcgtgcactttgacttt
atggaccctcctgctccagagaccttgatgcgtgcactcgaacttctaaactaccttggc
gcgttggacgacgacggtaatctgacacagatcggatcagtcatgagtgatttccctctt
gaccctcaactggcaaagatggtctgcgcctctccgcagttcagatgcagcaacgaaatt
tttacaataacgtctatgctttcagtgccaaatccattcatccgcccgcgagatcaacag
agcgaggccgatgaagcaaagtcccgatttagtcacatcgatggagaccatctgacactg
ctcaatgcatatcatgctttcaagcaaaataacgaagattcgcagtggtgctataataat
tacataaactaccgggctatgaagtctgcagacagcgttcgaagtcaactggtccgcatc
gcatctcgctttaacatgtcactcatgtctacggatttcacaagtagagactattacttg
aatatccgcagagccatactatcgggctacttcatgcaggtggcacatctagagcggcaa
ggatcgtacttgaccgtcaaagacaatcagatggtctcacttcacccttcgacgtgctta
gatcacaagcctgaatgggtaatgtacaacgagtttgttttgacgacaaaaaactatatt
cgcatttgtaccgaggcgaagggagattggctggttgaggttgccccgcactactacgac
ttgacgaatttcccagagtgtgaagcaaaaagggtgttggagcgaatatgtgaacgatca
aagaccaattataaaaggacttga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (119)   
   KEGG ORTHOLOGY (1)   
   RefGene (113)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (135)   

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