KEGG   Micromonas commoda: MICPUN_82234
Entry
MICPUN_82234      CDS       T02695                                 
Name
(RefSeq) predicted protein
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
mis  Micromonas commoda
Pathway
mis03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mis00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MICPUN_82234
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mis03019]
    MICPUN_82234
Enzymes [BR:mis01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     MICPUN_82234
Messenger RNA biogenesis [BR:mis03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     MICPUN_82234
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     MICPUN_82234
SSDB
Motif
Pfam: Exo_endo_phos
Other DBs
NCBI-GeneID: 8243992
NCBI-ProteinID: XP_002502331
JGI: MicpuN3_82234
UniProt: C1E7D9
Position
5:join(1453674..1453768,1453870..1454761)
AA seq 328 aa
MTALTRITSYNILAQCYVRSSYFPHSPSSCLKWKARSRNLVNELAGLDSDVLALQEVDQY
EEFWQPWLVERGYDGVYKCRTQLTKSKRDGCGLFFKRDKFELLARRDIEYNDIAWGRPVG
YVHPEGSPEPTEAPVDADGGANKYIRDCVGVLALLRSKTATDGYVMVASTHLYWDPAHAD
VKLAQARRLLGEVELFLASNSPIGSVPVVTAGDFNSVPGSEVHSAMLGGFGGRRLRSAYA
AAIGEGVVRGADGGSDSSVAVGKHGEPAHTNVTPGFTDCIDYVFVDDGVAVRSAMPLPGR
DEVATGLPDATRGSDHLPLTVDLELWSR
NT seq 987 nt   +upstreamnt  +downstreamnt
atgacggcgttgacgcgcatcacctcgtacaatattctcgcgcaatgctacgtacgaagc
tcttactttccgcacagtccctcctcgtgtctcaaatggaaggcgcgcagccgcaacctc
gtcaacgagctcgctggtctcgactctgacgtcctcgcgctgcaggaggttgaccagtac
gaggagttctggcagccgtggctcgtggagcggggatacgacggggtatacaaatgccgc
acgcagctgaccaagtccaagcgtgatggctgtgggctgttcttcaagcgagacaagttc
gagctgctcgcgaggcgggacatcgagtacaacgacatcgcatggggtcggccggtgggg
tacgtccaccccgaggggagcccggagcccacggaggccccggtcgacgccgacgggggc
gcgaacaagtacatccgagattgcgtcggcgtcctggcgctgctcaggtcaaagacggcg
acggacgggtacgtcatggtggcgtccacgcacctgtactgggatcccgcgcacgcggac
gtgaagctcgcgcaggctcgcaggctcctgggcgaggtggagctgttcctcgcgtcgaac
tctccgattggctcggtgccggtggtgacggctggggacttcaactcggtcccgggcagc
gaggtgcactccgccatgctcggaggctttggcgggagaaggttgaggagcgcgtacgcg
gccgccatcggggagggggtggtgcgtggcgcggacggtggctccgattcgtccgtcgcc
gtggggaaacacggggagcccgcgcacacgaacgtgaccccggggtttacggattgcatc
gattacgtgttcgtcgacgacggcgtcgcggtgaggagcgcgatgccgctgcccgggagg
gacgaggtggcgacgggcctgccggacgcgacgcggggcagcgatcacctgccgctcacc
gtcgatctcgagctttggagtcgttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (37)   

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