KEGG   Microvirga sp. 17 mud 1-3: C4E04_07600
Entry
C4E04_07600       CDS       T05470                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
miv  Microvirga sp. 17 mud 1-3
Brite
KEGG Orthology (KO) [BR:miv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    C4E04_07600
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:miv03400]
    C4E04_07600
Enzymes [BR:miv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C4E04_07600
DNA repair and recombination proteins [BR:miv03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     C4E04_07600
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_primase_S
Other DBs
NCBI-ProteinID: AWM86605
UniProt: A0A2Z3II04
Position
complement(1622505..1624097)
AA seq 530 aa
MAKLATYRAKRDFTKTSEPKGAASRRQGSSFVIQKHDASRLHYDFRLELDGVLKSWAVTK
GPSLVPGEKRLAVEVEDHPLSYGDFEGTIPEGQYGGGTVMVWDRGTWTPEDDPHDGLAKG
RLSFRLDGEKLHGTWHLIRMGKRPREKQPSWLLNKGDDAFAREADDPDILEEAPSSVKTG
RSLDEIAGRDPKKASVKKRAPAKAASKTGSSKAGSTKTKSSSSSQKASSGAEVAGIALTH
PDRVLWEDQGLTKQQLAEFYVGIAEWLLPHLQNRPLTLIRCPSGAQKSCFVQRHPWAGLS
DAIHRESVRDESGEAELLAIRDIQGVVALVQSGVLEMHVWGATLADLEHPDRLIFDLDPG
EGVAWPDVVAGARAVRERLRGYGLESFAKTTGGKGLHVVAPLTPKAGWDAALTFTRSLAQ
AMAADEPERYTTTSVKQERAGRIFIDYLRNNREASAVAPYSTRARPGAPVSTPVSWEELA
KVEPNGFTVVNLNRRLARLKKDPWAEFAGIDQVLPDAPKAKRKRVRSEEP
NT seq 1593 nt   +upstreamnt  +downstreamnt
atggcaaagctcgcgacctatcgcgccaagcgcgacttcaccaagacctccgagccgaag
ggagccgcctcccgtcggcaaggctcctccttcgtcatccagaagcacgacgcctcccgc
ctccattacgatttccgcctggagctggacggcgtcctgaagagctgggccgtcacgaag
gggccgagccttgtccccggcgagaagcgcctcgccgtcgaggtcgaggaccatcccctc
tcgtacggggatttcgagggcacgatcccggaaggtcagtacggaggcggaaccgtcatg
gtctgggaccggggcacctggacgccggaggacgacccgcatgatggcctcgccaagggc
cgcctcagcttccgcctggacggcgagaagcttcacggaacctggcacctgatccgcatg
ggcaagcgcccgcgcgagaagcagccctcgtggctcctcaataagggcgacgacgcgttc
gcgcgcgaagccgacgaccccgacattctcgaagaagccccctcgtccgtcaaaaccggc
cgctccctggacgagatcgcaggccgcgatccgaaaaaggcctctgtgaagaagagagcg
cccgcgaaggcagcttctaagactggttcgtccaaggccggctcaaccaagacgaaatcc
tcctcgtcgagccagaaggcctccagcggcgctgaggtcgccgggatcgcgctcacccac
cctgaccgggtcctgtgggaggatcaggggctcaccaagcaacagcttgcggagttctat
gtcggcatcgccgaatggctcctgccacatctacagaaccgtcccctcacgctgatccgc
tgcccctcgggtgcgcagaagagctgctttgtccagcgccatccctgggccggcctctcg
gacgccatccaccgcgagagcgtgcgggacgaatccggcgaggcggagctgctcgcgatc
cgtgacatccagggcgtcgtcgccctcgtgcaatccggcgtcctggagatgcatgtctgg
ggcgccaccctcgccgatctggagcatccggaccggctgatcttcgacctcgacccgggc
gaaggcgtcgcatggccggatgtggttgccggcgcccgtgcggtccgagagcgccttcgt
ggttacggcctcgagagcttcgccaagaccacgggcggcaagggcctgcatgtggtcgcg
cccctgacgccgaaggccggctgggacgcagccctgaccttcacccgcagcctcgcccag
gccatggcggcggacgagccggagcgctacaccaccacgtccgtgaagcaggaacgcgcg
ggacgcatcttcatcgattacctgcgcaacaaccgggaggcgtccgccgtcgcgccctac
tcgacccgcgcaaggcccggggcgccggtctcgaccccggtctcctgggaggagcttgcg
aaggtcgagcccaacggctttacggtcgttaatttgaaccggcgcctggcccgcctcaag
aaggacccctgggcggagtttgccggcatcgaccaggttcttcccgacgccccgaaggcg
aagaggaagcgcgtcagatcagaggagccttga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (18)   

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