KEGG   Mycolicibacter sinensis: JDM601_0642
Entry
JDM601_0642       CDS       T01512                                 
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V (alpha chain) RecD
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
mjd  Mycolicibacter sinensis
Pathway
mjd03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:mjd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    JDM601_0642 (recD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mjd03400]
    JDM601_0642 (recD)
Enzymes [BR:mjd01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     JDM601_0642 (recD)
DNA repair and recombination proteins [BR:mjd03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     JDM601_0642 (recD)
SSDB
Motif
Pfam: AAA_19 AAA_30 UvrD_C_2 AAA_11 Viral_helicase1 UvrD-helicase AAA_22 Helicase_RecD PhoH SH3_13 AAA_16 nSTAND3 AAA_28 NTPase_1 Mg_chelatase Herpes_Helicase UvrD_C SLFN-g3_helicase SRP54 T2SSE AAA_5 TrwB_AAD_bind NACHT MukB CbiA AAA_29 DO-GTPase1 AAA
Other DBs
NCBI-ProteinID: AEF34642
UniProt: F5Z3B6
Position
complement(683046..684800)
AA seq 584 aa
MNTELDPLSWRVARGATGVLREFNEAGVLEAADVHTAQRLCALGAESDETVALAVALAVR
ALRTGSVCVELATVADGTESPELSWPEPAAWLAAVRASSLVAKQVLRIYDNDSGGLLYLD
RYWREEEQVCADLLALSTPQDGSVELPGLERLFPPDHDDQRAAAEIALTQAVTVLTGGPG
TGKTTTVARLLALLAEQAAASGRRPLRIALAAPTGKAAARLTEAVAGVVAGLEPKDQARL
AGLQASTLHSLLGSRPGNSARFKHNRGNRLPHDVIVVDETSMVSLTLMARLLEAVRPTAR
LILVGDPDQLASVEAGAVLADLVDGLAARPGTRVATLVTAHRYKKAIGELASAIRAGDGD
TVIELLRSGDEHREWLDASTPAALGDQLAAIAVPHALRVRQAALLGDAGEALRNLDEHRL
LCAHRDGPHGANHWNHQIRRWVSEQTGDPVWADWYAGRPLLVTANDYGLGVRNGDTGVVV
ARADGLRAVIATASGAVDFATGRLSDVDSMYAMTIHKSQGSEADVVTVLMPPVESRLLTR
ELFYTAVTRAKHQVRVIGSEDEIRAALDRRAVRASGLALRLREA
NT seq 1755 nt   +upstreamnt  +downstreamnt
atgaacaccgagcttgatccactgtcgtggcgggtggcgcgcggcgccaccggcgtgctg
cgcgagttcaacgaggccggcgtgctggaagccgcggatgtgcataccgcccaacggctc
tgcgcgctgggcgccgaatccgacgagacggtggcgttggcggtggcgctggcggtgcgg
gcgttgcgcaccggctcggtctgcgtggagctggccaccgtggccgacggcaccgagtct
cccgagctgagttggccggagccggcggcctggctggcggcggtgcgcgccagctcgctg
gtcgccaagcaggtgttgcgcatctacgacaacgattcgggcgggctgctgtatctggac
cgctattggcgtgaggaggagcaggtctgcgccgacctgctggcgctgtcgacgccgcag
gacggttcggtcgagctgcccgggctcgaacggctgtttccgccggaccacgacgaccag
cgcgccgccgccgagatcgcgttgacgcaggcggtcacggtgctcaccggcggcccgggg
accggcaagaccaccacggtggcccggttgctggcactgctggccgaacaggccgcggcg
tccgggcggcgaccgttgcggatcgcgctggccgccccgaccggcaaggccgcggcccgg
ctgaccgaggcggtcgccggggtggtggccgggctcgagccgaaagatcaggcccgactg
gctgggctgcaggccagcacgttgcactcgctgctgggttcgcgaccgggaaattcggcg
cggttcaagcacaatcgcggcaaccggctgccgcacgacgtgatcgtggtcgacgagacg
tcgatggtgtcgctgacgctgatggcccggctgttggaggcggtgcggcccaccgcccgg
ctgatcctggtgggcgaccccgaccagttggcgtcggtggaggccggtgcggtgctggcc
gacctggtggacggcttggccgcccgcccgggcacccgggtggcgacgctggtgaccgcg
caccgctacaagaaggcgatcggtgagctggcctcggcgatccgcgccggcgacggcgac
accgtgatcgagctgctgcgctccggcgacgagcaccgggaatggctcgacgcgtcgacc
ccggccgcgctgggcgaccagctggcggcgatcgcggtgccgcacgcgttgcgggtgcgc
caggcggcgctgctcggcgatgccggcgaggcgttgcgcaacctcgacgagcaccggctg
ttgtgcgcgcaccgcgacggcccgcacggggccaaccactggaaccatcagattcggcgg
tgggtgtccgagcagaccggggatccggtgtgggcggactggtatgccgggcggccgctg
ctggtcaccgccaacgattacgggctgggcgtgcgcaacggcgacaccggggtggtcgtg
gcccgcgccgacgggctgcgggcggtgatcgcgacggcgtccggtgcggtggatttcgcc
accggccggctctccgacgtcgacagcatgtacgcgatgaccattcacaagagccagggc
agcgaagccgatgtggtgaccgtgctgatgcccccggtggagtcgcggctgctgacccgc
gagctgttctacaccgcggtgacccgcgccaaacaccaggtgcgggtgatcggctccgag
gacgagatccgtgccgcgctggatcggcgggcggtgcgggcgtccgggctggcgctgcgg
ttgcgtgaggcctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (28)   
   Pfam (28)   
All databases (38)   

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