KEGG   Manis javanica (Malayan pangolin): 108406009
Entry
108406009         CDS       T06054                                 
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
  KO
K14326  regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
Organism
mjv  Manis javanica (Malayan pangolin)
Pathway
mjv03013  Nucleocytoplasmic transport
mjv03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mjv00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    108406009 (UPF1)
   03015 mRNA surveillance pathway
    108406009 (UPF1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mjv03019]
    108406009 (UPF1)
Enzymes [BR:mjv01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     108406009 (UPF1)
Messenger RNA biogenesis [BR:mjv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     108406009 (UPF1)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     108406009 (UPF1)
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase ATPase nSTAND3 Helicase_RecD DEAD AAA_16 UvrD-helicase SRP54 UvrD_C_2 AAA_22
Other DBs
NCBI-GeneID: 108406009
NCBI-ProteinID: XP_036859664
Position
Unknown
AA seq 1117 aa
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGSGVAG
GPVGAGAAAGQLDPQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPIH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETIL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFD
RMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKT
VLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV
VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRT
AERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVG
DHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSL
QNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLL
KAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSC
VRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEG
PLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQ
THDQIGMIGAGPGPVAAVNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQ
KNRFGLPGPSQANLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQDS
YLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq 3354 nt   +upstreamnt  +downstreamnt
atgagcgtggaggcgtacgggcccagctcgcagacgctcaccttcctggacacagaggaa
gccgagctgctcggcgccgacacgcagggctccgagtttgagttcaccgacttcaccctt
cccagccagactcagacgcccccgggcggccccggcggccccgggagtggggtcgcgggg
ggcccggtgggcgcgggtgcggcggccggacagctggacccgcaggtcggcggacctgag
ggcatcctgcaaaatggggccgtggatgacagtgtggccaagaccagccagttgttggct
gaattgaactttgaagaagatgaggaagatacctattacacaaaggatctccccatacac
gcctgcagttactgcggaatacatgatcctgcttgcgtggtttactgtaataccagcaag
aagtggttctgtaacggacgtggaaatacttctggcagccacattgtaaatcacctcgtg
agggcaaaatgcaaagaggtgaccctgcacaaggatgggcccctgggagagacaattctg
gagtgttacaactgcggctgccgcaacgtcttcctccttggcttcatccctgccaaggcc
gactcggtcgtggttctgctgtgcaggcagccctgtgccagccagagcagcctcaaggac
atcaactgggacagttcccagtggcagcccctgatccaggaccgctgcttcttgtcctgg
ctggtcaagatcccctcggagcaggagcagctgcgggccaggcagatcactgcccagcaa
atcaacaagctggaggaactctggaaggaaaacccttctgccacgttggaggacctggag
aagccaggggtggacgaggagccacagcatgtcctcctgcgatatgaggacgcctaccag
taccagaacatattcggcccactggtcaagctggaggctgactatgataagaagctgaag
gagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaagaagaga
atcgcctacttcactttgcccaagactgactctgacatgcggctcatgcagggggatgaa
atatgcctgcggtacaaaggggacttggcacccctgtggaaagggatcggccatgtcatc
aaggtccctgacaattatggcgatgagatcgccattgagctgcggagcagtgtgggtgca
cctgtggaggtgactcataacttccaagtggatttcgtgtggaagtccacctcatttgac
aggatgcagagcgcgttgaagacgtttgccgtggacgagacctctgtgtcggggtatatt
taccacaaactgctcggccacgaggtagaggacgtgatcatcaagtgccagctgccaaag
cgcttcacggcacaggggctccctgaccttaaccactctcaggtttatgctgtgaagact
gtgctgcagagacctctgagcctgatccagggacccccaggtacagggaagacagttacc
tcggccaccatcgtctaccacctggctcggcagggcaatgggcccgtgcttgtctgtgct
ccaagtaacatcgccgtggaccagctgaccgagaagatccaccagactgggctgaaagtt
gtgcggctctgcgccaagagccgtgaggccatcgactccccggtgtcctttctggctctg
cacaaccagatcaggaacatggacagcatgcctgagcttcagaagctgcagcagctgaag
gatgagactggggagctgtcgtcggctgacgagaagcggtaccgggccctgaagcgcacc
gccgagagggagttgctcatgaacgcagatgtcatctgctgcacatgtgtgggtgccggg
gacccgcggctcgccaagatgcagttccgctccattctcattgacgagagcacccaggcc
accgagcctgagtgcatggtccccgtggtcctcggagccaagcagctgatcctcgtgggt
gaccactgccagctaggccctgtggtgatgtgcaagaaggcagccaaggctggcctgtcc
cagtccctcttcgagcgcctggtcgtgctgggcatccggcccatccgcctccaggtccag
tatcggatgcaccctgcactcagcgctttcccgtccaacatcttttacgagggctctctc
cagaacggtgtcactgcagcggatcgtgtgaagaagggatttgacttccagtggccccag
cctgacaagccgatgttcttctatgtgacccagggccaagaggagatcgccagttcgggc
acctcctacctgaacaggacggaagctgcaaacgtggagaagatcaccacgaagctgctg
aaggcgggtgccaagccagaccagattggcatcatcacgccctatgagggccagcgctcc
tacctggtgcagtacatgcagttcagcggctccctgcacaccaagctctaccaggaggtg
gagattgccagtgtggacgcattccagggccgtgagaaggacttcatcatcctctcctgc
gtgagggccaacgagcaccagggcatcgggttcctaaatgacccccggcgactaaacgtg
gccctgaccagagcaaggtacggggtcatcattgtgggcaatccaaaggccctgtccaag
cagccgctctggaaccacctgctgaactactacaaggagcagaaggtgctggtggagggg
cccctgaacaacctgcgcgagagcctcatgcagttcagcaagcccaggaagctggtcaac
accatcaacccgggagcccgcttcatgacaacagccatgtatgacgcgcgggaggccatc
atcccaggatccgtctatgatcggagcagccagggtcgcccctcaaacatgtacttccag
acccacgaccagattggcatgataggtgcaggccctggccctgtggctgccgtgaacatc
cccatccccttcaacctggtcatgccgcccatgcccccacctgggtacttcggacaagcc
aacgggccggcggcaggccggggcaccccaaaaggcaagactggtcgtgggggacgccag
aagaaccgctttgggcttcctgggcccagccaggcgaatctccccaacagccaggccagc
caggatgtggcatcccagcccttctcgcagggcgccctgacccagggctacatctccatg
agccagccctcccagatgagccagccgggcctctcccagcccgagctgtcccaggacagt
taccttggcgatgaatttaagtcacagatcgatgtggcactgtcacaggactccacgtac
cagggggagcgagcgtaccagcacggtggagtgacagggctgtcccagtactag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (17)   
   Pfam (17)   
All databases (30)   

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