KEGG   Methylacidiphilum kamchatkense: kam1_1856
Entry
kam1_1856         CDS       T06102                                 
Name
(GenBank) tRNA-splicing ligase RtcB
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
mkc  Methylacidiphilum kamchatkense
Brite
KEGG Orthology (KO) [BR:mkc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:mkc03016]
    kam1_1856
Enzymes [BR:mkc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     kam1_1856
Transfer RNA biogenesis [BR:mkc03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    kam1_1856
 Prokaryotic type
   tRNA splicing ligases
    kam1_1856
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-ProteinID: QDQ43068
UniProt: A0A0C1RLU6
Position
1860391..1861821
AA seq 476 aa
MEMSLLEKVSESCWQIPAHGTMRVPVIIYGSEKIIQQMDQKVAEQASNVASLPGIVKASY
VMPDAHWGYGFPIGGVAAFDPDQDGVISAGGVGFDISCGVRTLLTGLQEKDIEPIKNKLA
DLLFKEIPAGVGSHGKIHLDKNEMDKMLVGGAKWAIEQGYGKEEDLQRIEEGGCMPGADP
QAVSNLAKERQAKEMGTLGSGNHYAEVQVVGKIFDEAIAKLLSIHEGDIVVSIHCGSRGL
GHQIGTDYLKEMVLCAQKLKIELPERELACAPIQSDLGKRYLGAMRAGINCALANRQILT
HLIRKVFSYFFPNISMPLLYDVSHNTCKVEEHSINGGSKKLFVHRKGATRAFGPGHPEIP
KDLKEAGQPVLIGGSMGTHSYILVGTTQSERLAFSSAVHGAGRAMSRSKALKEWKGKEII
KSLEAKGILIRAVSERGVAEEAPLAYKDVSDVVEAAHKAKLAKLIARLDPLICIKG
NT seq 1431 nt   +upstreamnt  +downstreamnt
atggaaatgtccttgcttgaaaaagtttccgagagttgttggcaaattcctgctcatggg
acaatgagggttccagtgattatttatgggtctgaaaaaataatccaacaaatggatcaa
aaagttgccgaacaggcttccaacgttgcctctttaccaggaattgttaaagcatcttat
gtgatgcccgatgcgcattggggatatggatttccaataggaggcgttgcagctttcgat
cctgatcaggatggggtaatatcggcaggaggcgttggatttgacatctcctgtggagtc
agaacccttttaacaggattgcaagaaaaagacattgagccaatcaaaaataaactcgct
gatcttctcttcaaagaaattccagcaggagtggggagtcatgggaagattcacttggat
aagaacgaaatggataagatgcttgtcggcggagcaaaatgggctatcgagcaaggctat
ggcaaagaagaggatcttcagagaatagaagaagggggatgcatgcccggagctgatcct
caagccgtttccaatcttgcaaaagaacggcaagcaaaagaaatgggcacgttgggttca
gggaaccattatgcagaggtacaagttgttggcaaaatttttgatgaggctatagccaaa
ttactgtccatccatgaaggagatatcgttgtgagtattcattgtggctcccgaggatta
gggcatcaaattgggacggattatttaaaagagatggtactttgtgcccaaaaactcaag
attgaattacctgaaagagaacttgcctgtgctccgatccaatcggatcttgggaagaga
tatcttggagcgatgcgagcaggaattaattgtgccttggctaacagacagatcctcacg
catttgattagaaaagtattttcctatttctttccaaacatttccatgcctttgctctat
gatgtctctcacaatacctgtaaagtcgaagagcattcgattaatggaggctcaaaaaaa
ctgtttgtgcatcggaaaggagctactcgcgcttttggtccaggtcaccctgaaatccct
aaagatctgaaagaggctggtcaaccagtccttatagggggcagcatgggcacccattcc
tatattttggttgggacgactcaaagcgagcggcttgctttttcttctgcagtacatgga
gccgggagagccatgagcagatccaaggctttgaaagaatggaagggtaaagagatcatt
aaaagccttgaagcaaaaggcatcctgatccgagctgtttcagagcgcggtgttgcagaa
gaagctcccttagcctataaggatgtcagtgacgtcgtggaagcggcacataaagcaaag
cttgctaaactgattgcacggcttgatcccttaatttgtatcaaaggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (9)   

Download RDF
DBGET integrated database retrieval system