KEGG   Mycobacterium sp. KMS: Mkms_0987
Entry
Mkms_0987         CDS       T00442                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
mkm  Mycobacterium sp. KMS
Pathway
mkm03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mkm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Mkms_0987
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mkm03021]
    Mkms_0987
   03400 DNA repair and recombination proteins [BR:mkm03400]
    Mkms_0987
Enzymes [BR:mkm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Mkms_0987
Transcription machinery [BR:mkm03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Mkms_0987
DNA repair and recombination proteins [BR:mkm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Mkms_0987
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_45 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_1 Peptidase_M23
Other DBs
NCBI-ProteinID: ABL90201
UniProt: A1UBJ3
Position
1077658..1081176
AA seq 1172 aa
MLEGCILAVSSQSKSAKAITNNSVPGAPNRISFAKLREPLEVPGLLDVQTESFDWLIGAD
SWRQRATARGDVNPTGGLEEVLTELSPIEDFSGSMSLSFSDPRFDEVKAPVDECKDKDMT
YAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFD
ESIDKSTEKTLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTNEQI
TERFGFSEIMMSTLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDL
ARVGRYKVNKKLGLNTDKPITSSTLTEEDVVATIEYLVRLHQGDTVMTVPGGVEVPVEVD
DIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIK
EFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHSSHYGRMCPIET
PEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGVVTDQIDYLTADEEDRHVVAQANSPL
DDEGHFTEDRVLVRRKGGEVEFVSATEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMG
ANMQRQAVPLVRSEAPLVGTGMELRAAIDAGDVVVSEKAGVVEEVSADYITVMADDGTRH
TYRMRKFARSNHGTCANQRPIVDAGQRVEAGQVVADGPCTQNGEMALGKNLLVAIMPWEG
HNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERG
IVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVI
GIRVFSREDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILPVEDMPFLP
DGTPVDIILNTHGVPRRMNIGQILETHLGWVAKAGWNINVAGADGVPDWAEKLPEELYSA
PSDSIVATPVFDGARENELSGLLASTLPNRDGDVMVNEDGKAELFDGRSGEPFPYPVTVG
YMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQ
ELLTIKSDDTVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIE
MRDGDDEDLERAAANLGINLSRNESASVEDLA
NT seq 3519 nt   +upstreamnt  +downstreamnt
gtgctggaaggatgcatcttggcagtctctagccagagcaagtcagcaaaagctatcacc
aataactccgttcccggagcaccaaatcgcatttccttcgccaagctccgtgagcctctc
gaggttccggggcttctcgacgtgcagacggaatcgttcgactggctgatcggcgccgac
agctggcgtcagcgggccaccgcacgcggtgacgtgaacccgaccggtggcctcgaagag
gtgctgaccgagctctcgcccatcgaggacttctccggctcgatgtcgctgtccttctcc
gacccgcgcttcgacgaggtcaaggcacccgtcgacgagtgcaaagacaaggacatgacg
tacgcggccccgctgttcgtcacggcggagttcatcaacaacaacaccggtgagatcaag
agccagacggtcttcatgggtgacttcccgatgatgaccgagaagggcaccttcatcatc
aacggcaccgagcgtgtcgtggtgagccagctggtccgctcgccgggtgtgtacttcgac
gagtcgatcgacaagtccaccgagaagacgctgcacagcgtcaaggtgatccccggccgc
ggtgcgtggctcgagttcgacgtcgacaagcgcgacaccgtcggcgtccgcatcgaccgc
aagcgccgtcagcccgtcaccgtgctgctcaaggccctcggctggaccaacgagcagatc
accgagcggttcggcttcagcgagatcatgatgagcacgctggagaaggacaacaccgca
ggcaccgacgaggcgctgctcgacatctaccggaagctgcgtccgggcgagccgccgacc
aaggagtccgcgcagaccctgctggagaacctgttcttcaaggagaagcgctacgacctg
gcccgcgtcggccgctacaaggtcaacaagaagctcggcctcaacaccgacaagccgatc
accagctcgacgctgaccgaagaggacgtcgtcgccacgatcgagtacctggtgcgcctg
caccagggcgacaccgtgatgacggtgcccggtggcgtcgaggtgcccgtagaggtcgac
gacatcgaccacttcggcaaccgtcgtctgcgcaccgtgggcgagctgatccagaaccag
atccgcgtcggcctctcgcgtatggaacgtgtcgtgcgtgagcgcatgaccacccaggac
gtcgaggcgatcacgccgcagaccctgatcaacatccgtcccgtcgtggcggcgatcaag
gagttcttcggtacgtcgcagctgtcgcagttcatggaccagaacaacccgctgtccggc
ctgacccacaagcgtcgcctgtcggcgctgggccccggcggtctgtcccgtgagcgtgcc
ggcctcgaggtccgcgacgtgcactccagccactacggccgcatgtgcccgatcgagacc
cctgagggtccgaacatcggtctgatcggttcgctgtcggtgtatgcccgggtcaacccg
ttcggcttcatcgagacgccgtaccgcaaggtcgaaaacggtgtggtcaccgaccagatc
gactacctcaccgccgacgaggaggaccgccacgtcgtggcgcaggccaactcgccgctc
gacgacgagggccacttcaccgaggaccgcgtcctggtccgccggaagggtggcgaggtc
gagttcgtgtcggccaccgaggtggactacatggacgtctcgccgcgccagatggtgtcg
gtcgcgacggcgatgatcccgttcctcgagcacgacgacgccaaccgtgccctcatgggt
gccaacatgcagcgccaggccgttccgctggtccgcagcgaggccccgctggtcggcacc
ggtatggagctgcgcgccgcgatcgacgccggcgacgtcgtcgtcagcgagaaggcgggc
gtggtcgaagaggtcagcgccgactacatcaccgtgatggccgacgacggcacccggcac
acctaccggatgcgcaagttcgcccgctccaaccacggcacctgcgccaaccagcgtccg
atcgtggacgccggccagcgtgtcgaggcggggcaggtcgtcgccgacggcccctgcacc
cagaacggtgagatggccctgggcaagaacctgctcgtggcgatcatgccgtgggagggc
cacaactacgaggacgcgatcatcctctccaaccgtctggttgaggaggacgtgctcacc
tcgattcacatcgaagagcacgagatcgatgcccgtgacaccaagctgggcgccgaggag
atcacccgggacatcccgaacgtctccgacgaggtgctggccgacctcgacgagcgcggc
atcgtccgcatcggcgccgaggtccgtgacggcgacatcctggtcggcaaggtcaccccg
aagggtgagaccgagctgaccccggaggagcggctgctccgcgcgatcttcggtgagaag
gcgcgcgaggtccgcgacacgtcgctcaaggtgccccacggtgagtccggcaaggtcatc
ggcatccgcgtgttctcccgcgaggatgacgacgagctgcccgccggcgtcaacgagctg
gtccgcgtgtacgtcgcgcagaagcgcaagatctccgacggtgacaagctggccggacgc
cacggcaacaagggcgtcatcggcaagatcctgcccgtcgaggacatgccgttcctgccc
gacggcaccccggtggacatcatcctgaacacccacggtgtgccgcgtcgtatgaacatc
ggccagatcctggagacccacctcgggtgggtggccaaggccggctggaacatcaacgtg
gccggtgccgacggcgtcccggactgggccgagaagctccccgaggagctctactcggca
ccgtcggacagcatcgtcgccaccccggtgttcgacggtgcccgcgagaacgagctgtcg
ggtctgctcgcctccacgttgcccaaccgtgacggcgacgtcatggtcaacgaggacggc
aaggccgagttgttcgacggacgcagtggcgaaccgttcccgtacccggtgacggtcggc
tacatgtacatcctcaagctgcaccacctggtggacgacaagatccacgcccgctccacc
ggtccgtactcgatgatcacccagcagccgctcggtggtaaggcgcagttcggtggtcag
cggttcggcgagatggagtgctgggccatgcaggcctacggcgccgcctacacgctgcag
gagctgttgacgatcaagtccgacgacaccgtcgggcgcgtcaaggtgtacgaggccatc
gtcaagggcgagaacatccccgagccgggcatcccggagtcgttcaaggtgcttctcaag
gaactgcagtcgctgtgcctcaacgtcgaggtgttgtcttctgacggtgccgcgatcgag
atgcgtgacggtgacgacgaggacttggagcgtgccgctgccaacctcggaatcaacctg
tcccgcaacgagtccgcgtccgtcgaggacctcgcctag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (7)   
   Pfam (7)   
All databases (19)   

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