KEGG   Methanocorpusculum labreanum: Mlab_1139
Entry
Mlab_1139         CDS       T00472                                 
Name
(GenBank) DNA topoisomerase, type IA, central domain protein
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
mla  Methanocorpusculum labreanum
Brite
KEGG Orthology (KO) [BR:mla00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mla03032]
    Mlab_1139
   03400 DNA repair and recombination proteins [BR:mla03400]
    Mlab_1139
Enzymes [BR:mla01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     Mlab_1139
DNA replication proteins [BR:mla03032]
 Prokaryotic type
  DNA Topoisomerases
   Mlab_1139
DNA repair and recombination proteins [BR:mla03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      Mlab_1139
SSDB
Motif
Pfam: Topoisom_bac Toprim HHH_5 zf-C4_Topoisom RAD51D_N FtsA HTH_10
Other DBs
NCBI-ProteinID: ABN07308
UniProt: A2SSK2
Position
complement(1152162..1154969)
AA seq 935 aa
MHLIIAEKNIVAERIAAFLAGKAKVQVTRDGAAAHYVFDDTVVMGLRGHVVEVDFVEGYN
NWRSVEHPPRSLINADIVKKPTEKKIVGLMQKFGKKATRVTIATDYDTEGELIGKEAFEL
IRAANPKVPIDRARFSAITKDEIVKSIKEATSLDFNLASAGESRQIIDLVWGASLTRFLS
ITAHRGADSILSVGRVQSPTLAMIVDREREIEAFVPTKYWMLSLATEKSGIGVEARHVHG
RFTDSAEAKAAYDATVEPLRVTDVITGHKVDRAPTPLDTTALIVGASRLGISASYAMNRA
EDLYMRGFISYPRTDNTAYPKSLKISEQLAIFAHGAFSKEAGYVKDHLRSVPTRGKKETT
DHPPIYPTSLANREEIGDDVSWKLYEFIVRRFFATICIDAEWETMKVNLLAGSEPYTITG
GRILEAGWRGIYPYSKAEENLLPAFTLGETLPLLAKTSDEKETQPPARYSQSRLIQRMEE
LGLGTKSTRHEVISKLSGRKYIEGNPMKPTIVGRAVTESLEEFAGTITEPTMTKTLEEHM
GDIAAGTKTINAVLSESRKMLTGIFDDLEKNEAAIGRDLMERTREEQTIGPCPVCGKPLR
IKRVGSSQFIGCSGYPDCTFNTGLPPATWGNAIKMDEVCGIHGLNHVQLLRKGAPAWKIG
CPLCSHIKSNTESFLLMPGMTAEGVQKLNAVHIYTLSELISRGPEELSKSLGLSKSEAEK
LIREAGSVLALLKKRTELKKFVSSHVAPKRGRGHSKVSAALISLGVVDVEALSRADPKDL
LETKLSEAEAASLVAEAKSMVNISRMKEYGVPAITLKKYVNAGFDDPEKFISVHPAGLSL
ATGVSVTTICNHQKLVAEKLCRPCPEKISKAAFEEGIAPLRKKAEPELLTPLALAGVYSP
DLLVKADAKTLAKVTGIDEKQIVNLQKYAQKVLEK
NT seq 2808 nt   +upstreamnt  +downstreamnt
atgcatctcatcatcgccgaaaagaatattgttgccgagcgaatcgcagcatttcttgca
ggcaaagcgaaggtccaggtcacacgggacggtgccgcggcgcattacgtcttcgacgac
accgtggtcatgggtcttcgcggtcacgtggtcgaggtcgacttcgtggaaggctacaac
aactggcgaagcgtcgaacatcctccaagatctctgatcaatgcggacatcgtcaagaag
ccgacggaaaaaaagatcgtcggccttatgcagaagtttgggaagaaagcgacccgcgtg
acgatcgcaaccgattatgataccgaaggagaactgatcggcaaggaggcgttcgaactc
atccgtgcggccaatcccaaggtcccgatcgaccgtgccagattctccgcgatcacgaaa
gacgagatcgtcaaatccatcaaggaagcgacgtctctcgacttcaatctcgcctccgcg
ggcgaatcccgtcagatcatcgatctcgtgtggggagcttcgcttacccgttttctttcg
ataaccgcccaccgcggagcagacagcattctttccgtcggacgcgtgcagagtccgacc
cttgctatgatcgttgaccgcgaacgcgaaatcgaagcgttcgttccaaccaaatactgg
atgctttcgctggcaacggagaaatccgggatcggcgtcgaggcacgccatgtacacgga
agattcactgactccgccgaagcaaaggccgcatacgacgcgaccgtcgaaccccttcgg
gtaacggacgtcatcaccggccataaggtcgaccgtgcgccgactcctctggacacgact
gctttgatcgtcggcgcgagcaggcttggcatttctgcatcgtatgcgatgaatcgtgcc
gaagatctctatatgcgcggattcatttcgtatccgagaaccgacaacaccgcttatccg
aagagtctgaaaatctccgagcagctggcaatctttgcccacggcgcattctcgaaagag
gccggatacgtgaaggatcatctgcgttccgttccaacacgcggcaaaaaagagacgacc
gaccacccgccgatctatcctacctcgcttgcaaaccgcgaggagatcggggacgacgtg
tcctggaaactctacgagttcatcgtgcggagattctttgcgacgatatgtatcgatgcg
gagtgggagacgatgaaggtgaatctgcttgcaggcagtgaaccctacacgatcacgggc
ggcaggatcctcgaggccggctggcgcggtatctatccatacagcaaagcggaggagaat
ctccttccggcgttcacactgggagagaccctcccgcttcttgcaaaaacgtccgatgaa
aaggagacgcagccgcccgcacgttactcccagagccggcttattcagaggatggaggag
ctggggcttgggacgaaaagtacccgccatgaggtcatcagcaaactttccggcagaaag
tacatcgaaggcaacccgatgaagccgacgatcgtcggccgggcagtgaccgagtcgctc
gaagagttcgccggcacgatcacggagccgacgatgaccaagacgcttgaagagcacatg
ggagacattgccgccgggaccaagacgatcaacgcggtcctttccgaatcgagaaaaatg
cttaccggcatcttcgacgatctggagaagaacgaggccgcgatcggcagagatctgatg
gagcggacccgcgaagagcagaccatcggcccctgtcccgtctgcggcaagccccttcgg
ataaaacgggtcggcagctcccagtttatcggctgctccgggtatcccgactgtactttc
aatacgggtctgccgccggcgacctgggggaatgccatcaagatggatgaggtgtgcggg
attcacgggctgaaccatgtccagctgcttcgaaaaggagctcccgcctggaagatcggc
tgcccgctctgttctcacataaaatccaataccgaatccttcctgctgatgcccggcatg
acggcggaaggcgtgcagaagctgaatgccgttcacatctatacgttatccgaactgatc
tcccgaggtcccgaggaactttcgaagagtctgggcctttccaagtccgaggcggagaag
cttatccgggaagccggatccgttctggctctcttaaagaaacggaccgaactgaaaaag
ttcgtatcgtctcatgtcgctcccaagaggggccgcggccactccaaagttagtgctgcc
ctgatctcgcttggggtcgtcgatgtggaagctctgtcccgggcggatcccaaagatctt
ctcgaaacaaaactcagcgaggcggaggccgcatcgctcgtggccgaggcgaagagcatg
gtcaatatctcccgcatgaaggagtacggcgttccggcgatcacgctgaagaagtacgtc
aatgcgggattcgatgacccggaaaagttcatctcggtccatccagcgggtctgtcgctt
gcgaccggcgtgtcggtcacaacgatctgcaatcaccagaaactggttgcagaaaagctc
tgccggccgtgtccggagaagatcagcaaagctgctttcgaggagggtattgctcccctt
agaaaaaaagccgagcccgaacttctgaccccgctggcacttgcgggcgtttacagtcct
gatctgctggtaaaggccgatgcgaagacacttgcaaaagttaccggtatcgatgaaaaa
cagattgttaatctgcaaaagtatgcacaaaaggtgttagaaaaatga

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (28)   

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