KEGG   Methylovirgula ligni: CWB41_05550
Entry
CWB41_05550       CDS       T05824                                 
Name
(GenBank) exodeoxyribonuclease I
  KO
K01141  exodeoxyribonuclease I [EC:3.1.11.1]
Organism
mlg  Methylovirgula ligni
Pathway
mlg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mlg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    CWB41_05550
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mlg03400]
    CWB41_05550
Enzymes [BR:mlg01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.1  exodeoxyribonuclease I
     CWB41_05550
DNA repair and recombination proteins [BR:mlg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     CWB41_05550
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     CWB41_05550
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      CWB41_05550
SSDB
Motif
Pfam: Exonuc_X-T_C RNase_T RNase_H_2
Other DBs
NCBI-ProteinID: QAY95262
Position
complement(1139493..1140917)
AA seq 474 aa
MGYVFFDTETTGLDPAFDQIVHFAAIQTDHDLNESGRFEMRARLQPHVVPHPSALRANGL
PITRLNDRSEPSHYEMMSQIRRQLIAWSPAIFVGYNSIGFDEHMLRYGLFQSLFPAYLTS
HHQNGRADAFGLVQAACALTPSCLIVPRKSDGRPSFKLDQLAPANGVAHAGAHDAMSDTL
AVVDLCRLVRRCSNEAWQRFVRFSNRAAVAEFVDGEDGFVLTEFFAGEPIHRAVVCIGRN
PTNSNGRFCLDLSIAPETWRSMTDVDIRAEIARKGTPVRRIRVNGAPTLTSFYDATDGLL
NGVDPAIAERRALQFKNDPGLCGKIIALYSASWADVPPSPHVERRLYSDGFPSDADQQRM
FDFHDANGWERVQIAGHFEDQRLQAFAQRLIHYEHRSLLDSDSQRTADVRLARRLIEDSG
GPLTLPHALAETERLIADPIGDPLGLLMDYRDYLKARIDKISAFQAIHSQLTIV
NT seq 1425 nt   +upstreamnt  +downstreamnt
atgggctatgtcttcttcgacaccgagacgacaggcctagatccggcctttgatcagatc
gtccacttcgccgcgatccaaacggaccatgacctgaacgaatcgggccggttcgaaatg
cgcgctcgccttcagcctcatgtggtgccgcatccaagcgcactgcgcgccaacggcctt
cccatcacgcgcttgaacgaccgctcagagccctcccactacgaaatgatgtcccagatt
cgtcggcagctcattgcttggtcgcctgcaatctttgttggatataactcgatcggcttt
gacgagcacatgctgcgctacggcctttttcaatctctttttcctgcctatctcacgagc
caccatcagaacgggcgcgccgatgccttcggattggttcaggccgcttgtgcgttgacg
cctagctgcctgatcgttccgcgaaaatcggacggtcggcccagcttcaaactcgatcaa
ctggcccccgccaatggcgtcgcgcatgcgggtgctcatgacgcgatgtcggacacacta
gcggtcgtcgatctttgccggctggtgaggagatgctcaaacgaagcgtggcagaggttt
gttcggttctcaaatcgggcggcggtcgccgaattcgtagatggagaagatggtttcgtc
ctcacggagttctttgcaggggagccgattcaccgggccgtcgtctgcatcggccgtaat
cccaccaactcgaatggacggttctgcctcgatctctccatcgccccggaaacgtggcgc
agcatgacagacgtcgacatccgagccgagatcgcgcgcaagggaacgcccgtccggcgc
attcgcgtaaacggcgctccgaccctgaccagtttctatgacgctaccgatggtctgtta
aacggggttgatcccgcgatcgctgaaaggcgagcgctacagttcaagaacgatcctggt
ctctgcggcaagatcattgctctctattcggcatcttgggcagacgtcccgccgtcaccc
catgttgaaaggcgtctctattccgacgggtttccctcggacgctgaccagcaacgcatg
ttcgattttcacgatgctaacggatgggagagggtgcagatcgccggccactttgaagac
caacgcctgcaggccttcgcccagcgcctgatccattacgaacatcgctcgctgctcgat
tcagactcccagcgaacggcagacgttcgcctcgcccggcgtctcatcgaagacagcggt
ggaccgctgacccttccacatgctcttgcagagaccgagagactgatagccgatccgatc
ggagatccgctcggccttttgatggattatcgcgactacctaaaggcgcgaattgataag
atcagcgccttccaagccatccacagccaattgaccatcgtctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (3)   
   Pfam (3)   
All databases (11)   

Download RDF
DBGET integrated database retrieval system