KEGG   Mesorhizobium japonicum MAFF 303099: mll1539
Entry
mll1539           CDS       T00043                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
mlo  Mesorhizobium japonicum MAFF 303099
Pathway
mlo03030  DNA replication
mlo03410  Base excision repair
mlo03420  Nucleotide excision repair
mlo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mlo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    mll1539
   03410 Base excision repair
    mll1539
   03420 Nucleotide excision repair
    mll1539
   03430 Mismatch repair
    mll1539
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mlo03032]
    mll1539
   03400 DNA repair and recombination proteins [BR:mlo03400]
    mll1539
Enzymes [BR:mlo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     mll1539
DNA replication proteins [BR:mlo03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     mll1539
DNA repair and recombination proteins [BR:mlo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     mll1539
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     mll1539
   MMR (mismatch excision repair)
    DNA ligase
     mll1539
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      mll1539
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 DNA_ligase_ZBD PTCB-BRCT RUBY_RBDX
Other DBs
NCBI-ProteinID: BAB48890
RhizoBase: mll1539
UniProt: Q98KC4
Position
complement(1279308..1281512)
AA seq 734 aa
MAEKPVDSLSESEAEAELKRLAEEIAGHDRRYHAEDAPTITDAEYDALRRRNLAIEERFP
GLVREDSPSRRVGAPPAEGFAKVRHAVPMLSLAKAYTDEDVTDFIERGRRFFDRDKDLDI
AFTAEPKIDGLSASLRYENGVFVQGATRGDGAVGEDITANLRTIADIPAKLKGSGWPDVI
EIRGEVYMTYAEFEALKARSAAAGGQDYVNPRNTAAGSLRQKDASVTASRNLKFFAYAWG
FTTADPAPTQYESVQKFADWGFKISPLMVRAKSVEELVAQYHLIEEQRSSLGYDIDGVVY
KVDQLELQRRWGFVTGEPRWAVAHKFPAEQAMTTVQKIDIQVGRTGTLAPVARLAPVTVG
GVVVENVTLHNEDYIKGFDSNGLPIRDGIDVRIGDTVVIQRAGDVIPQIVSVVIDKRPAD
AVPYEFPHTCPVCGSPATREINEKTGKEDSRRRCTGELICAAQAVERLRHFVSRGALDIE
GLGAENIDTFFNAGLIKTAADIFTLRDRRPAVTKALAERREEQARQREAASGKTRKNVRS
VEDRNYEGLDKLFAAIDSRREPELDRFIFALGIRHIGETTAAVLAKTFSTIEELIRVGKE
TAAAEDPHTVFPSVNGIGDTVIDALCDFFGNERNDDVLDKLLEQVKPKPYIVTVSADSEV
AGKTIVFTGTLEKMTRSEAKAMAERLGAKVAGSVSAKTDLLVAGPGAGSKLKLASELGVE
VIDEDTWLQRVGKA
NT seq 2205 nt   +upstreamnt  +downstreamnt
atggccgaaaaacctgtcgattcgctcagcgaaagcgaggctgaagccgagctgaagcgc
ctggcggaggagatcgccgggcacgaccggcgctaccatgccgaggacgcgcccacgatc
acggacgccgaatatgatgcgctgcggcggcgcaaccttgccatcgaggagcgttttccc
ggcctggtgcgcgaggattcgccgtcgcgcagggtcggtgcgccgccggcggagggcttt
gccaaggtgcgccatgccgtgccgatgctcagcctcgccaaggcctataccgacgaggat
gtcaccgatttcatcgagcgcggccggcgcttcttcgaccgcgacaaggacctcgatatc
gccttcaccgccgaaccgaagatcgacgggctgtcggcgtcgttgcgctatgagaatggc
gtgttcgtgcagggcgcgacgcgcggcgacggcgccgtcggtgaggacatcaccgccaat
ctccgaaccatcgccgatatccccgcgaagctgaaaggctcgggctggccggatgtcatc
gagatacgcggcgaggtctacatgacctatgcggagttcgaggcgctgaaagcgcgctcg
gcggcggccggcggccaggattacgtcaatccgcgcaacacggcggccggctcgctgcgc
cagaaggatgcttcggtcacagccagccgcaatctcaaattcttcgcctatgcctggggc
ttcacgaccgcggatccagcgccgacccagtatgaatcggtgcaaaaattcgcggactgg
gggttcaagatcagccctttgatggtgcgggcgaagtcggtcgaggaactggtcgcgcag
taccatctgatcgaggagcaacgctcctcgctcggctatgacattgatggtgtcgtctac
aaggtcgaccagctggagttgcagcgccgctggggtttcgtcaccggtgaaccgcgctgg
gcggttgcccacaaattcccggccgaacaggcaatgacgaccgtgcagaagatcgacatc
caggttggccgtaccggcacgctggcgccggtcgcaaggcttgcgcccgtcaccgttggc
ggcgtcgtggtcgaaaatgtcacgctgcacaatgaggactacatcaaggggttcgacagc
aacggcctgccgatccgcgacggcatcgacgtgcgcatcggcgacacggtggtgatccag
cgggcgggagacgtcattccgcagatcgtcagtgtcgtcatcgacaagcgtccggccgat
gccgtgccttacgaattcccgcacacctgtccggtctgcggctcgccggcgacgcgcgag
atcaacgagaagaccggcaaggaggattcccgccgacgctgcaccggcgaactgatctgc
gccgcgcaagccgtggaaagattgcgccatttcgtctcgcgcggggcgctcgatatagag
ggactgggcgccgaaaacatcgacactttcttcaatgccgggctgatcaagaccgccgcc
gatatttttacgctcagggatcgccgtcccgccgtcaccaaggcgctggccgagcgacgc
gaggagcaggccaggcagcgcgaagcggcgtccggcaagacgcgcaagaacgtgcgcagt
gtcgaggatcgcaactatgaaggcctcgacaagctgttcgcagccatcgattcgcgccgc
gaaccggagctcgatcgcttcatcttcgcgctcggcatccgccacatcggcgagacgacg
gcggccgtgctcgccaagaccttttccaccatcgaggaactgatccgcgtcggcaaagag
acggcggcggcggaggatccgcacaccgtcttcccatcggtcaacggcatcggtgacacg
gtgatcgatgcgctgtgcgatttcttcggcaatgagcgcaatgacgacgtgctcgacaag
ctgctcgagcaggtcaagcccaagccctatatcgtcaccgtctcggccgacagcgaggtc
gccggcaagaccatcgtcttcaccggcacgctggagaagatgacgcgctcggaagccaag
gcgatggccgaacgtctcggcgcaaaggtcgccggctcggtttcggccaagaccgacctg
ctggtcgccggacccggcgccggctccaagctcaagcttgccagcgaactcggcgtcgaa
gtcatcgacgaggacacctggctgcaacgggtcggcaaggcgtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   OC (1)   
   RHIZOBASE (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (7)   
   Pfam (7)   
All databases (39)   

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