KEGG   Mycobacterium lepraemurium: MLM_1008
Entry
MLM_1008          CDS       T05534                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mlp  Mycobacterium lepraemurium
Brite
KEGG Orthology (KO) [BR:mlp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    MLM_1008
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mlp03400]
    MLM_1008
Enzymes [BR:mlp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MLM_1008
DNA repair and recombination proteins [BR:mlp03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     MLM_1008
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: ATA27825
Position
982113..984647
AA seq 844 aa
MRAKCTVDQGGLTKFSIRGPRRRARHRRRQQPIYGHSEIRHTGVLVAGTCVAASHLAARV
SAADCTLASAAPARRFSSMNAPRAWPAEPTATPRVKLTNADKVLYPATGTTKADVFDYYT
RIADVMIPHIAGRPVTRKRWPNGVDQESFFEKQLASSAPDWLPRASVTHRSGTTTYPIID
SATGLAWIAQQAALEVHAPQWRFVAEWTRSRAEELKPGPATRLVFDLDSGEGVTMAQLAE
VARAVRDLIDGIGLQTFPLTSGSKGLHLYTPLTEPVSSKGATVLAKRVAQQLEKTMPKLV
TSTMTKSLRAGRIFVDWSQNNGSKTTIAPYSLRGRDHPTVAAPRTWDELDDPALRHLRYD
EVLTRVARDGDLLAELDASDNQTPVPDRLTKYRSMRDASKTPEPVPAAKPAAGQGNTFVI
QEHHARRLHYDFRLERDGVLVSWAVPKNLPDTPAVNHLAVHTEDHPLEYGGFEGVIPKGE
YGAGRVVIWDSGTYDAEKFQDDEVIVNLHGRKISGRYALIQTQGDQWLAHRMKDQNVFDF
DTIAPMLATHGSASALKASQWAFEGKWDGYRLLVEVDHGTLRVRSRRGREVTGEYRELCS
LAKALEDNHAVLDGEAVVLDKRGVPNFHEMQNRGKGVRVEFWAFDLLYLDGRSLLRARYR
DRRKLLEMLASGGALTVPELLPGDGDQALQQSAELGWEGVIAKRRDSTYQLGRRSSSWIK
DKHWNTQEVVIGGWKAGEGGRSSGIGSLLMGIPGPGGLHFAGRVGTGFTERDLANLKKML
APLRTDQPPFDAPLPRSEAKGVTFVEPVLVGEVRYSEWTPDDRLRQSSWRGLRPDKEASE
VVRE
NT seq 2535 nt   +upstreamnt  +downstreamnt
ttgcgggccaaatgtaccgtcgatcaagggggtctgaccaagttcagtattcggggcccg
cgccgccgcgcgcggcatcgccgccgtcaacagccgatttacgggcacagtgaaattcgc
cacaccggggtgttggtcgccggcacctgcgtcgccgcctcgcaccttgcggctcgcgtg
tcggccgccgattgcaccctggcgtcggcggcaccggcgcgtaggtttagcagcatgaac
gcgccgcgcgcttggcccgctgagccgacggcgacgccgcgggtgaaattgactaacgcc
gacaaggtgctctatcccgcgacgggaaccaccaaagccgacgtcttcgactactacacg
cggatcgccgacgtgatgatcccgcacatcgccgggcgtccggtcacccggaagcgctgg
cccaacggcgtcgatcaggaatcgttcttcgagaagcagctggcctcctcggcaccggac
tggctgccgcgcgccagcgtgacccaccgatccggcacgacgacctatccgatcatcgac
agcgccaccggcctggcctggatcgcccagcaggcggcgctggaggtgcacgcgccgcag
tggcggttcgtcgcggagtggacccgaagccgggccgaagaactcaaacccggcccggcg
actcgactggtgttcgacctcgactcgggcgaaggcgtgacgatggcccagctcgccgag
gtggcgcgcgccgtccgcgacctgatcgatgggatcgggctgcagacgttcccgctcacc
agcggcagcaagggactgcacctgtacacgccgctgacggagccggtgagcagcaaaggc
gccaccgtgctggccaaacgcgttgcgcagcaactggaaaagaccatgccgaagctggtc
acgtcgaccatgaccaagagcctgcgggcgggaaggatctttgtggactggagccagaac
aacggctccaagacgaccatcgcgccctattcgctgcgcgggcgcgaccaccccaccgtc
gccgcgccgcgcacctgggacgaactcgacgacccggcactgcgtcacctgcgctacgac
gaagtgctgacccgggtcgcccgcgacggtgacctgctcgctgagctggacgcctccgac
aaccagacaccggtgccggaccgcctgaccaaataccgcagcatgcgcgacgcctccaaa
acacccgagccggttcctgccgcaaaaccggctgcgggacaaggcaataccttcgtcatc
caagagcaccacgcccggcggctgcactacgacttccgactggagcgcgacggggtgctg
gtgtcctgggcggtgccgaagaacctgcccgacacccccgcggtgaatcacctagccgtg
cacaccgaggatcacccgctggaatacggcgggttcgagggcgtcatccccaaaggcgaa
tacggggcgggcagggtggtcatctgggactccggaacctatgacgccgagaagttccag
gacgacgaggtgatcgtcaacctgcacggccgcaagatctccgggcgctacgcgctgatc
cagacccagggcgaccaatggctggcgcaccggatgaaggaccagaacgtcttcgacttc
gacacgatcgccccgatgctcgccacccacggttcggcgtcggcgctcaaggcgagccag
tgggcgttcgagggcaaatgggacggctaccggctactggtcgaggtcgaccacggcacc
ctgcgggtgcggtcccggcgcggtcgcgaagtcaccggtgagtaccgcgaattatgctcg
ctggcaaaggctctcgaggataaccacgcggtgctcgacggcgaggccgtggtgctggac
aagcgcggcgtgcccaacttccacgagatgcagaaccgcggcaagggcgtgcgggtcgaa
ttctgggcgttcgacctgctctatctcgacggccgctcgctgctacgggcccgctaccgc
gaccggcgaaaactgttggaaatgctggcctccggcggtgctctgaccgttcccgagctg
ctgcccggcgatggtgaccaagcgctgcagcagtccgccgaactcggttgggagggcgtg
atcgccaagcggcgcgactccacctatcagctgggccggcgctcgtcctcctggatcaag
gacaagcattggaacacccaggaagtcgtgatcggcggctggaaggccggggaaggcgga
cgcagcagcggcatcggttccctgctgatgggtattccgggcccgggcggcctgcacttc
gccggccgcgtcggcaccgggttcaccgaacgcgacctggccaacttgaagaagatgctg
gctccgctgcgcaccgaccaaccgcccttcgatgcgccgcttccccgcagcgaggccaag
ggcgtcacgttcgtcgagccggtgctggtgggcgaggtgcgctacagcgagtggacaccg
gatgaccggctgcgccaatcgagttggcgcgggctgcggccggacaaggaagcaagcgag
gtggtacgagagtga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (20)   

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