KEGG   Melampsora larici-populina: MELLADRAFT_118113
Entry
MELLADRAFT_118113 CDS       T03138                                 
Name
(RefSeq) hypothetical protein
  KO
K12878  THO complex subunit 1
Organism
mlr  Melampsora larici-populina
Pathway
mlr03013  Nucleocytoplasmic transport
mlr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mlr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    MELLADRAFT_118113
  09122 Translation
   03013 Nucleocytoplasmic transport
    MELLADRAFT_118113
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mlr03019]
    MELLADRAFT_118113
   03041 Spliceosome [BR:mlr03041]
    MELLADRAFT_118113
Messenger RNA biogenesis [BR:mlr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     MELLADRAFT_118113
Spliceosome [BR:mlr03041]
 Complex C
  Other components
   EJC/TREX
    MELLADRAFT_118113
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    MELLADRAFT_118113
SSDB
Motif
Pfam: efThoc1
Other DBs
NCBI-GeneID: 18926161
NCBI-ProteinID: XP_007416605
JGI: Mellp1_118113
UniProt: F4S587
Position
Unknown
AA seq 975 aa
MNIQTTISLPTTPFSQFQSSLKSSLDSYLITIGNQRVDQSSQNPLTTFDPLVVIELSSAL
NVLWSQLPSLPSTALELQRSIVSSVLTSIVSQTAYPAQHSFSLPVHHQLLHDALDISLVL
IEQDRAPADLTLSCIEDILETATVEEAERIFCYLESRVDRLTVGMLPDRGKGLIFLRMQN
NLLRRLSKSLHTVFCGRILSFLSSVFPIAEKSGVNLRGAFNTGNVTHFDQDIEKKGVEAV
DSQGSETIKSDPVVETNLLKSNETTADAMIIEKSLPASQDKPIPSDEPASTDPKIQTDST
LDGENVEKSFEMKEESPEEVAARSRAKADEQEARAKAKAASKAGKLFTMATPTLLTSDKR
EFYLRFWALQSLLSNPPELFKGWQPDPNATPATVTPQSNPHTYPSSRPTSLLAPSTSLQR
ASPVREVEAAPSTANLKRLKEGINKTLDVFGRMTKKEKELGTHSKKPKIDERNLAEVKEH
YFFPKFLTKSNLLDLEVADSYFRRQVLTQFLIILKYIRGFSLEERNKRAALPKPNRVSEV
PYVYQARDDGWVRKLNGEVWKTLYATPPNGEVFALTIKQILTREQNWIMWKAGSCPSFER
PSLGDEMIKAAEANYKRIIAPPMRFPHPVGTPALSKLWSNKVTPESIESMDFSEGVPDLN
ALHGKIMAQEKQLSALKESLLAQGKSDTDVSNDPQVQAIQERKSSLSWRALRVAQTTHLQ
LFGKIGLPGSVNKLMTLIEDAKTRSNGINSTRQLATSNQMVSTPTGTVVTDATQITPGTS
GIEAESDLLSRTKDGDENSVQLVASSDNHDGQPLLDPFVQPDIVMLDGESIEDTNPVTSK
SLPASETEEEEPAPAVPANPDPAPPISIPPPLDLQPQKPQPQPQQQQQPPPPPPPPSQVN
VPHHPHVPNGPSRFNNHHHHLSRHQSPATPHSGRLHMPSHRNMQVNPIADSITDIDQVIR
RAEARAAPELARSHA
NT seq 2928 nt   +upstreamnt  +downstreamnt
atgaacattcaaactaccatctcactcccaacaacgccattctcccaattccaatctagt
ctcaagtctagcctcgattcatacctcatcactatcggtaatcagcgtgtggatcaaagt
tcacaaaatccacttactacctttgatccacttgttgtgatcgaactctcttctgctctc
aatgtgctttggtctcaacttcctagccttccttctactgccttggaacttcagcgttca
atcgtctcatcagttctcacttccatcgttagccaaaccgcatatccggctcaacattcc
ttctcactaccagttcatcatcaattacttcacgatgctctcgacatttctttagtcttg
attgaacaggatagagcaccggctgatcttacattgagctgtatcgaagacattcttgaa
acagccacagtggaagaagctgagcggatattctgctacctcgaatctcgtgtagatcga
ttaaccgtcggaatgcttccggatcgtggaaaaggtttaattttcttaagaatgcaaaat
aatctattaagaagactatcgaaatcacttcatactgtcttttgtggaagaattttgagt
tttctttcctcggtctttccgattgctgaaaagagtggtgtcaacctgagaggagcattc
aacacgggaaatgtgacacacttcgatcaagatatcgaaaagaagggagtcgaagcggtc
gattcacaagggagcgagactatcaagtcggacccggtggtcgaaaccaatctccttaaa
tccaacgaaacaactgccgatgccatgatcatcgagaagtcactcccagcttcccaggac
aaacccatcccttcggatgaacctgcctctacagacccaaagattcagaccgactctaca
ttagacggcgaaaatgttgagaagtcttttgagatgaaggaagaatcaccagaagaagta
gcagcgagatctcgggccaaagcagatgaacaagaagcccgagccaaggcaaaagcagct
tcaaaagccggcaagttattcactatggccacacctacattattaacttccgacaagcga
gagttttatctacgtttttgggcacttcaatctctactctccaatccacccgaacttttc
aaaggatggcagcctgatcccaacgccacaccagcaacggttaccccgcagtccaaccct
catacatatccatcctctcgccctacatcgctcctggccccttcaacaagtctccagcgt
gcctcgcctgtgcgtgaggtcgaggcggcaccatcaacggccaacttgaaacgtctgaaa
gaagggatcaacaaaactctggatgtctttggtcggatgactaagaaagaaaaggaattg
ggcactcattcaaagaaacccaagatcgacgagcggaatttggccgaagtgaaagaacat
tatttctttccaaagtttctcacaaagagcaacttattggatctagaggttgcagactcc
tactttcgtagacaagttttaacccaatttctaatcattcttaaatacattcgagggttc
tctctggaggaacgaaacaagcgcgctgctttacccaaacctaatagggtcagcgaggtt
ccatacgtctatcaggctagggatgatggatgggttcggaaactgaatggcgaagtatgg
aaaacgctttatgcgactccgccgaatggcgaagtgtttgcattgactatcaagcagatc
ctgacaagggaacagaactggatcatgtggaaagctggctcatgtccaagttttgaaagg
ccaagtctaggtgatgagatgatcaaggcagctgaagccaattataaacggatcatcgca
cctcctatgcgatttccacatccagttgggactccggcgcttagtaagctttggagcaac
aaggtgactccggagagcattgagagtatggacttttcagaaggggttccggatctcaat
gcattacatggaaagatcatggcacaggagaagcaattgtcggctctcaaagaaagtctg
ttggctcaagggaaatctgatacagacgtatcgaatgatccacaggtgcaagctatccaa
gagcgaaaatcttcactttcctggagagcgttgagagttgcacagactactcatttacag
ttgtttggcaagattggtctacctggaagcgtgaataaattgatgactctgatcgaggac
gccaagacgcgctcaaatgggatcaactcaacccgacaattggcaacatcgaaccaaatg
gtttcgactcctactggaactgttgtgaccgatgcgacgcagataactccaggaacgtct
gggattgaagccgagtccgatttactttcgcgaacgaaagacggagacgagaattcggta
cagcttgtggcaagctctgataatcacgatggacaacctttgctggatccattcgttcaa
cctgatatcgtgatgctcgatggtgagagcatcgaggacacaaatccagtgactagcaaa
tctttgcccgcctccgaaactgaagaggaagagccagctcctgctgtgccagccaacccc
gatccggctccacccatctccatccccccaccactcgacttgcagcctcaaaagccacag
ccacaaccacaacagcagcagcagccgcctccccctcccccaccaccatcgcaagtcaat
gtgccccaccaccctcatgtgcctaatggtccaagtcggttcaacaatcatcatcatcat
ctctcacgccatcaatcgcctgccactcctcactctggccgacttcatatgccttcccat
cgcaatatgcaagttaacccaattgcagactcaatcacagacatagatcaagtgatcaga
agagcagaagcaagagcagcgcctgaactagctcgatcacatgcatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (50)   
   KEGG ORTHOLOGY (1)   
   RefGene (45)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (60)   

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