KEGG T03822: MSLAZ

Methanosarcina lacustris: MSLAZ_0080

Entry

MSLAZ_0080        CDS       T03822

Name

(GenBank) RNA-2',3'-PO4:RNA-5'-OH ligase

K14415

tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]

Organism

mls Methanosarcina lacustris

Brite

KEGG Orthology (KO) [BR:mls00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:mls03016]
    MSLAZ_0080
Enzymes [BR:mls01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     MSLAZ_0080
Transfer RNA biogenesis [BR:mls03016]
Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    MSLAZ_0080
Prokaryotic type
   tRNA splicing ligases
    MSLAZ_0080

SSDB

Motif

Pfam:

RtcB

Other DBs

NCBI-ProteinID:

AKB73341

UniProt:

A0A0E3S088

Position

complement(101601..103103)

AA seq 500 aa
MVESEDTGTEELGTERVHRDIKSMVRKLSDNQWEIPIGHIPNMRVPGRLFVSENLLGGID
PDTIDQIANVATLPGIQKYSMAMPDAHLGYGFAIGGVAAFDAEEGVISPGGVGFDINCGV
RLIRTNLQKEEVVPKIKTLVDELFKNVPSGVGSKSRFRASDRELDSAFLEGAKWAVEAGY
GVKADVEHCEGNGCLEGADLSHVSTKARARGKPQIGTLGSGNHFLEVQYVDKIYDREAAS
AFGLEEGQVTVMVHCGSRGAGHQICTDHLKELSQAVKKYGIEIPDKQLACAPAQSREAQN
YFKAMLCAANYAWANRQMITHWTRESFEKVFSRDADDMGMSLLYDVAHNVAKLEEHNIDG
RKKEVYVHRKGATRAFPAGHPEVPAAYRDVGQPVLIPGSMGTPSFILCGAKEAMDVSFGS
ACHGAGRIMSRVQAKKEFQGQSIKDDLEAQGITVRATHPSVIAEEAPGVYKSSSEVVNVV
HELGIARKVARVIPIGVAKG

NT seq 1503 nt +upstreamnt +downstreamnt
atggtagaaagtgaagataccggtactgaggaattgggtacagaaagagtacacagagac
ataaagagcatggtccggaagctgtccgataatcaatgggaaatcccgatagggcacatt
cctaatatgcgggttccaggacgcctgtttgtatccgaaaatttgcttggaggcatcgat
ccagataccatcgaccagattgcaaacgtggcaactcttcctggcattcagaaatattcc
atggcaatgcctgatgcccacctcggctatgggtttgctataggaggcgttgcagctttt
gatgcggaggaaggagttatcagccccggtggagtgggttttgatatcaactgcggggta
cggttaatccgcacaaacctccagaaggaggaggtagttccgaaaataaaaacgctggtc
gacgagctatttaagaatgtaccttcaggtgttgggtctaaaagccggttcagagcttct
gaccgggaactggacagtgcgtttcttgaaggtgcaaaatgggcagtagaagcagggtat
ggtgtgaaagcggacgtggaacactgtgaggggaacggctgcctggaaggagcagatctt
tctcatgtgagcacaaaggcaagagctcgcggaaaacctcagataggaactctcggaagc
ggtaaccacttccttgaagtccagtatgtggacaagatttatgacagggaagcggcttca
gcctttgggcttgaagaaggccaggttacggtaatggtccactgtgggtcaagaggtgca
gggcatcagatctgcacggaccatctaaaagaactctctcaggctgtgaaaaagtacggg
attgaaattccggacaagcagcttgcatgtgctccggctcagtcaagggaagcacagaac
tatttcaaagctatgctctgcgctgcaaactatgcctgggcaaacaggcagatgatcact
cactggacacgtgagtcttttgaaaaggtatttagcagggatgctgacgacatggggatg
agcctcctgtatgacgttgctcataacgtagcaaaactggaagaacataacatagacggt
aggaaaaaagaggtttacgtgcacagaaaaggggcaacaagagcatttcccgccggacac
ccggaagttccagccgcatacagggatgtgggacagccggttttaattcccggaagtatg
ggaacgccttctttcatactctgcggtgcaaaagaggctatggacgtttctttcggcagt
gcctgccatggagccggaaggattatgagcagggtacaagcaaagaaagagttccagggg
caaagcataaaagatgaccttgaagcccaaggaatcactgtaagggcaactcacccttct
gtaattgcagaagaagctcctggcgtgtacaagtccagcagtgaggtcgtaaatgtcgtg
catgagcttggtattgcccgtaaggttgcaagagttatcccgataggggtcgcaaaaggt
taa

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (10)   

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