KEGG   Methanosarcina mazei Go1: MM_1895Help
Entry
MM_1895           CDS       T00082                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mma  Methanosarcina mazei Go1
Pathway
mma03030  DNA replication
mma03410  Base excision repair
mma03420  Nucleotide excision repair
mma03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mma00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MM_1895
   03410 Base excision repair
    MM_1895
   03420 Nucleotide excision repair
    MM_1895
   03430 Mismatch repair
    MM_1895
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mma03032]
    MM_1895
   03400 DNA repair and recombination proteins [BR:mma03400]
    MM_1895
Enzymes [BR:mma01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MM_1895
    6.5.1.6  DNA ligase (ATP or NAD+)
     MM_1895
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MM_1895
DNA replication proteins [BR:mma03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    MM_1895
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     MM_1895
DNA repair and recombination proteins [BR:mma03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MM_1895
   NER (nucleotide excision repair)
    Other NER factors
     MM_1895
   MMR (mismatch exicision repair)
    Other MMR factors
     MM_1895
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2 Vps5
Motif
Other DBs
NCBI-ProteinID: AAM31591
UniProt: Q8PVR7
Position
complement(2252874..2254613)
Genome map
AA seq 579 aa AA seqDB search
MRFKELAELFEELEKTTSHREIVRKISEFFKNLRGDEVKDSAYLFLGSTGPAFENTTLGI
KDMLAIRAIAGAYGVTREDVRKRYARTGDLGDVAFELSKKRESSLTIEDVFQRLLQIRET
SGKGSQEEKTALFSDILQKATPEEGKYIVRLVLGRLRLGFGDQFLLEAFAIAFTGDKKHA
AKIKESYSVCTDIGELAKILAENGARATGFISIKPGRPVKSMLSQRVESFEELEKRVKGK
KAAEEKYDGERVQVHKTGEGIKAFSRRLEDITSQYPEIIEDVRKTVPANEIVLDGEIVAY
AELERNGNRIEEFYPFQNLMQRRRKYEIENYRKKCPVAVFFFDILYLNGEPLLKRPYPER
RALLEMNVVESGIIRLSKRIVTESVEEIEDFFNETIEKGLEGIVVKSMSSNSYYEAGKRS
WFWFKWKQEYSEGMRETFDLVVVGSYYGRGRRKGSFGALLCAVLNKEGQRFETLTKVGTG
FTEADAEEINRLLSDHIVSEIPKGVSIKKGMLPDIFIEPAVVIEVLGSEITNSPGHTAGE
GEEETGLALRFPRFLRIRHDKTPYDAMTVKEVRDLKDGT
NT seq 1740 nt NT seq  +upstreamnt  +downstreamnt
gtgagatttaaagagcttgcagagctttttgaggagcttgagaagaccacgtcccacagg
gaaatcgtaagaaagatttctgaattttttaagaatctcaggggggatgaagtaaaggac
agcgcgtatctttttcttggaagcaccgggcctgcctttgaaaacacaaccctcgggatc
aaggacatgcttgccatacgggccattgcaggagcttacggagttaccagagaagatgtc
agaaaaagatatgcaagaacaggagacctaggagatgtggcttttgagctcagcaaaaaa
agagaatcttccctgaccattgaggatgtttttcaaaggcttctgcagataagagaaacc
tcaggaaaaggcagtcaggaagaaaaaacagcccttttttcggacatcttacaaaaagcc
acacctgaagaaggtaaatatatagtgcgacttgtgctcggaaggttaagattggggttc
ggagaccagttcttgctcgaagctttcgcaatcgcatttacaggagacaaaaaacatgcc
gcaaaaataaaagaaagctatagcgtctgtacggatatcggggagctagcaaaaatcctt
gcagaaaacggagcaagggctacagggtttatctccataaaaccgggtaggccggtaaaa
tccatgctctcccagcgagtcgaaagttttgaagagcttgaaaaaagggttaagggaaaa
aaagctgctgaagagaaatatgatggagagagggtgcaggtacataaaaccggtgagggg
attaaagctttttcccgcaggcttgaggacataacttcccagtaccctgaaattatcgaa
gatgtcagaaaaaccgtccctgcaaatgaaatagtgcttgatggagaaatagttgcatac
gcagaactggaaagaaacggtaaccggatagaagagttttacccgtttcagaacctcatg
cagaggcgaagaaagtacgagattgaaaattacaggaagaaatgcccggtagcagtattc
ttttttgatatcctttaccttaacggagagccccttctaaagaggccctatcctgaaaga
agggctttgcttgagatgaacgttgttgagtcaggaataattcgtctgtcaaaaagaatc
gttacggaaagcgttgaggaaattgaggatttttttaatgaaaccatagaaaaggggctt
gaaggaatagtggtcaagtccatgagcagcaactcttattacgaagccgggaaaaggagc
tggttctggttcaaatggaaacaggagtattccgaggggatgagagagacctttgacctt
gtggttgtggggagttattacggaagagggaggagaaaagggtcatttggagctcttctc
tgtgcagtcctgaataaagagggacagcggtttgaaacgttgacaaaagtgggaactggt
tttacagaagcggatgcagaagagatcaacaggttgctttcagaccatatagtaagcgaa
attccaaagggcgtttctattaaaaaaggtatgcttcctgatatctttatagaacctgca
gtagttatcgaagtccttggctcggagatcacaaacagccccggacatacggcaggagaa
ggagaagaagaaacaggacttgcactgcgtttcccccggttcttacgaataaggcacgac
aaaactccatatgatgccatgacagttaaggaagtaagggacctgaaggacggaacttaa

DBGET integrated database retrieval system