KEGG   Mycobacterium marinum E11: MMARE11_43720
Entry
MMARE11_43720     CDS       T04774                                 
Name
(GenBank) formamidopyrimidine-DNA glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
mmae  Mycobacterium marinum E11
Pathway
mmae03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:mmae00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    MMARE11_43720
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mmae03400]
    MMARE11_43720
Enzymes [BR:mmae01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     MMARE11_43720
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     MMARE11_43720
DNA repair and recombination proteins [BR:mmae03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     MMARE11_43720
SSDB
Motif
Pfam: H2TH Fapy_DNA_glyco zf-FPG_IleRS Ribosomal_S13 zf-TFIIB NFACT_N
Other DBs
NCBI-ProteinID: CDM78509
Position
complement(5295985..5296848)
AA seq 287 aa
MPELPEIEALVDHLRRHAVGTTIGRVDVAALSVLKTFDPPINALHGQTVTGAGRWGKHLG
VQAGPLWLIAHLSRAGWLRWSDKLVAAPLRPGKGPIALRVHLGTPGVAPGFDLTEAGTQK
RLAVWLVEDPRQVPGIATLGPDALELGPEELAGVLGPHTGRIKTVITDQKVIAGIGNAYS
DEILHVAKISPFATAAKLSEEQLAALHDAVVSVLTDAVSRSVGQGAATLKGEKRSGLRVH
ARTGLPCPVCGDTVREVSFADKSFQYCATCQTGGKVLADRRMSRLLK
NT seq 864 nt   +upstreamnt  +downstreamnt
gtgcccgaactcccggagatcgaagcgctggtcgaccacctgcgccggcacgccgtcggg
accaccatcggccgcgtcgatgtggccgcgctatcggtgctgaaaaccttcgacccgccg
atcaatgccctgcacggccagaccgtgaccggtgcgggccggtggggaaaacacctgggg
gtgcaggcggggccgctgtggttgatcgcgcacctctcgcgggcgggctggttgcgctgg
tcggacaagctggtggcggccccattgcgcccaggcaaaggcccgatcgcgttgcgcgtc
catctcggcacccccggggtggcacccggcttcgatctcaccgaagccgggacccagaag
cgcctggcagtctggctggtcgaggatccgcggcaggtgcccggcatcgccacgctcgga
ccggatgcgctcgaactcgggcccgaggagctggccggcgtcttgggcccccacaccggc
cggatcaagacggtcatcaccgatcagaaggtgatcgcgggcatcggcaacgcctacagc
gacgaaattctgcacgtcgcgaagatctcgccgttcgccacggccgcaaaactgtccgaa
gaacaacttgccgccttgcacgacgcggtggtctccgttctcaccgacgcggtcagccgt
tccgtcggccaaggcgccgccacgctcaaaggggagaagcgttccggcctgcgggtacac
gcgcgcaccggcctgccgtgcccggtgtgcggggacaccgtgcgagaggtttcgtttgcg
gacaagtcatttcaatattgcgcgacctgccagaccggcggcaaagtgctggccgaccgg
cgcatgtcgcggctgctcaagtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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