KEGG   Methylocaldum marinum: sS8_2654
Entry
sS8_2654          CDS       T05638                                 
Name
(GenBank) putative 2'-5' RNA ligase
  KO
K01975  RNA 2',3'-cyclic 3'-phosphodiesterase [EC:3.1.4.58]
Organism
mmai  Methylocaldum marinum
Brite
KEGG Orthology (KO) [BR:mmai00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:mmai03016]
    sS8_2654
Enzymes [BR:mmai01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.58  RNA 2',3'-cyclic 3'-phosphodiesterase
     sS8_2654
Transfer RNA biogenesis [BR:mmai03016]
 Prokaryotic type
  tRNA spricing factors
   Other tRNA splicing factors
    sS8_2654
SSDB
Motif
Pfam: LigT_PEase 2_5_RNA_ligase2 AKAP7_NLS
Other DBs
NCBI-ProteinID: BBA34601
UniProt: A0A250KUG7
Position
complement(2935176..2935721)
AA seq 181 aa
MSAEIKTLRLFFALWPDEEMRASLARLVDALKQTATGKWVKPENLHITLVFLGAVNEDRI
ASVNEVAEGIVAQPFELRLDRIEFWKKSGIICLSPTCTPVTLQNLANALTAELKRTGFVT
ENRPYRAHLTVARKGSPGVLSSRCLDDPICWSVRSFSLVESRTSRMGSLYQVRKIWNLPS
R
NT seq 546 nt   +upstreamnt  +downstreamnt
atgtctgccgagattaaaacgcttcgtttgttttttgcactttggcccgacgaagaaatg
cgtgcatcactggcgcgtcttgttgatgccctcaagcaaaccgccaccggtaaatgggta
aagccggaaaatcttcatattactctggtttttttgggggcggtgaacgaagatcggata
gcgtcggtcaatgaagttgccgagggcatagtcgcgcagccatttgaactgagattggac
cgaatcgagttctggaagaagagcgggattatctgcctgtcaccgacatgtacgccggtg
acattgcaaaatctagccaacgccttaaccgccgaactgaaacgaaccggatttgtcacg
gaaaacagaccgtaccgggcgcatctgaccgttgctagaaagggcagtccaggggtgctt
tcgtcacgatgtcttgacgatccaatctgctggagcgtgcgttcgttcagtctggtcgag
tcccggaccagccggatgggctcgctgtatcaagttcgaaagatctggaatctaccgagt
cgttag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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