KEGG   Methylocaldum marinum: sS8_2729
Entry
sS8_2729          CDS       T05638                                 
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
mmai  Methylocaldum marinum
Pathway
mmai03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mmai00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    sS8_2729
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmai03019]
    sS8_2729
   03009 Ribosome biogenesis [BR:mmai03009]
    sS8_2729
Enzymes [BR:mmai01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     sS8_2729
Messenger RNA biogenesis [BR:mmai03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     sS8_2729
Ribosome biogenesis [BR:mmai03009]
 Prokaryotic type
  rRNA processing factors
   sS8_2729
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 DnaJ_CXXCXGXG
Other DBs
NCBI-ProteinID: BBA34674
UniProt: A0A250KT39
Position
2994098..2996683
AA seq 861 aa
MRRMLINATQPEELRVALVDGQKLYDFDIEIPSKEQKKANIYKGIITRIEPSLEAAFVNY
GAERHGFLPFKEITPNYFGQPLDEEFSRRDIKDLIKEGQEVIIQVEKEERGSKGAALTTY
ISLAGSYLVLMPNNPRAGGISRRIEGDIRSDMREVMSQLEIPEGMGLIVRTAGGGKSAEE
LQWDLNYLLQLWEAIDRSAKEKPAPFLIFQESNVIIRALRDHLRGDIDEILIDDVGTFKL
VRSFLQQVMPQFIQKAKHYQDTVPLFSRYQIESQIETAYSREVPLPSGGAIVIDHSEALT
AIDINSARATKGGDIEETALNTNLEAADEIARQLRMRDLGGLFVIDFIDMMTARNQRAVE
NRLRDAIKADRARIQIGRISRFGLLEMSRQRLRPSLGESSLLTCPRCNGQGSVRSVQSLA
LSVLRIIEEEAMKKNTEKVVAHLPIDSATYLLNEKRSAIADIEKRHQVIVIIVPSKHLET
PAYEIQRIRSSGAEEEGERKPSYQLLRSEESDFPKFTRDAASISTEPAVKEFLPSHPLPI
TGTGKQAAGGFIKRFWSILTGGRLEDETESANEKPQPILSQATQQRPHRIAEFKQRQFPT
GGEMPEAHETEVRTSVPEKQDFGNGDRRTRDQSRRGGSRRRRSRRSESGPARGTQQTPSR
DSAQEKAGIVDFVMQESPTPSYEPADNEPTQAIMSALVSESEAQTETEPASVSQEQEDKP
EAPMIYLPKPESMQETRLGRESTISTNLPSVESFELDSSSDEEEETEAEREDSTIETPKS
PRRSLAKRRGRGRRDKRFSSRRVEFGEGQEDASQEECHEISEAASTADPEHTAADNGPTE
ESPDSATIVVPDKPSIEKGTE
NT seq 2586 nt   +upstreamnt  +downstreamnt
atgagaagaatgttgatcaacgccactcagcccgaagaacttcgggttgcgctggtggac
ggacaaaagctttacgactttgacatagaaatcccatccaaagaacagaaaaaagccaac
atctacaagggtattatcacccgcatagaacccagcctagaagctgctttcgtaaactat
ggcgctgaacgtcacggcttcttgccattcaaggagattacgccgaactatttcggacaa
cctctcgatgaggaattttcccgccgcgatatcaaggacttaatcaaagagggacaggaa
gtcattatccaggtggaaaaggaggagcgcggtagtaaaggtgcggcgctaacaacctat
atcagcctggccggcagttacctggtgctgatgcctaacaacccgcgcgccggcggcatt
tctcgacgtatcgaaggcgatattcgctccgacatgcgcgaggtaatgagtcaacttgaa
atccccgaaggtatggggctcatcgtgagaaccgccggaggcggcaaatcagccgaggaa
ctacagtgggacctcaattacctcttacagctgtgggaggcgattgatcgttcggccaag
gaaaaacccgcccctttccttatctttcaggaaagcaacgtaatcattcgcgcgttaaga
gatcatctccgcggcgatatcgacgagatattgatcgatgacgtcggcacgttcaagctg
gtgcgcagctttttgcagcaggtcatgcctcagtttattcaaaaggccaagcattatcag
gatacagtgccgctattcagtcgttatcagatcgagagccagatcgaaacggcctatagc
cgcgaggtcccattaccgtctggcggagccatagtgattgatcacagcgaagctctcacg
gcgatcgacatcaactccgcgagggcgacaaaaggcggcgatattgaagaaaccgccctg
aatacaaatctggaagcggccgacgaaattgcgcgccagcttaggatgcgggatttgggt
ggcttattcgtgatcgacttcatagacatgatgaccgcacggaaccagcgagcagtcgaa
aatcgactacgcgacgccattaaagcggatagggctaggatacagatcggccgaatttcg
cgcttcggattgctggaaatgtcacgacagcgtcttcggccttcgcttggcgaatcgagc
ttgctcacttgcccacgatgcaacgggcaaggctccgtgcgtagcgtacagtcactggca
ctgtcggtattgcgcatcattgaggaagaggcgatgaaaaaaaataccgaaaaagttgtc
gctcatctgcccatcgattcggcgacgtaccttctgaatgaaaagcggtctgccatcgct
gacatcgaaaaacgccaccaggttatcgttatcatcgtaccaagcaagcacttggaaacg
cccgcctatgaaatccagcggatacggagcagcggagcggaggaggagggggagcgaaag
ccgagctatcaattacttaggtcggaggaatccgatttcccgaaattcactagagatgcc
gcgtcaatcagcaccgaaccggccgtaaaagaattccttcccagccacccacttccaatc
accggtacgggcaaacaggccgcaggaggctttataaagcgattctggtcaatcttaacc
ggaggtcggcttgaagacgaaacggaatcggccaacgaaaagccccaaccaatactctcc
caagccactcagcagcgcccccatcgaattgccgaattcaaacaacgccaattccctacg
ggcggtgaaatgccagaagcccacgaaaccgaagtccgaacctcagttccagaaaaacag
gattttggcaatggtgaccggcggaccagagatcagtcaagacgcggggggtcgcgccgg
aggcgatcgagacggagcgaatccggcccggcgcgaggcactcagcaaactccatcgaga
gacagtgcccaggaaaaagcgggaatcgtcgatttcgtgatgcaggaaagtccgacgccg
agttatgaacctgccgataacgaaccaactcaggcaataatgtcggctctagtttctgaa
agcgaggctcaaaccgaaaccgaaccggccagcgtgtcacaagaacaggaggataaaccc
gaagctcctatgatctatctgccgaaaccggagtcgatgcaggaaactcgcctggggcga
gaaagtacaatttcgaccaacctgccgtccgtagaatcattcgagctcgattcatcttcc
gatgaagaggaggaaacggaagccgaaagagaagattcgactattgagactcccaagtca
ccccgtcgctccctggctaaacgtcgcggccgcggcaggcgcgataagagattttcctcc
cggcgggttgagttcggcgaagggcaagaagacgccagccaagaagagtgtcacgagatt
agcgaagcggcttcgacagccgacccggagcataccgctgctgacaacggacccaccgag
gaaagcccggactctgctaccatcgtcgtaccggataagccaagcatcgaaaaaggtacg
gagtaa

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