KEGG   Modestobacter marinus: MODMU_2490
Entry
MODMU_2490        CDS       T02167                                 
Name
(GenBank) RNA polymerase, sigma 54 (sigma N) factor
  KO
K03092  RNA polymerase sigma-54 factor
Organism
mmar  Modestobacter marinus
Pathway
mmar02020  Two-component system
mmar02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:mmar00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    MODMU_2490
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    MODMU_2490
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mmar03021]
    MODMU_2490
Transcription machinery [BR:mmar03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     MODMU_2490
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD HTH_31 HTH_23 HTH_Crp_2 HTH_38 MarR_2 HTH_Tnp_ISL3 Fe_dep_repress HTH_3 HTH_IclR Xre-like-HTH
Other DBs
NCBI-ProteinID: CCH87919
UniProt: I4EX06
Position
2453725..2454987
AA seq 420 aa
MAQGFAHRQLLSPLAVQVLASLTLTQAELDSLVAARLAANPVLVAGTPRRCRWCACTLQL
GRCPRCAGQVTLVHEPVAVEDEIEELRREARLMVRPALAPMVDLVVAQLDERGLLPGPSS
SVEAGARASDEWAEAVRAVRAAGPPGVAAPDVRSCLLDQARWHASNGGPALLVPIVAGHL
GRVAVGDHAEIAGDLGVSTSAVDDAVAFLRARLRPSVLTTGAVAAPVGAPPDVIVRRRGD
GLEVVVLDGADLGLGLDPELDALRLAGDSGEWLADRCADARALLDVVDRRAGALRRVATA
VVHAQRDFVLHGRAAHRPLTRAAVAAALGVHPSTVSRAVQGAVVALPDGGVLPLAAFFGK
AVAVVDCLARMLASPDPPRSDADAVARLGVAGHVVARRTVTKYRHLLDTAAAGRAKRSSP
NT seq 1263 nt   +upstreamnt  +downstreamnt
atggcacaggggttcgcccaccggcagctcctgtccccgctggccgtccaggtgttggcg
agcctgaccctgacccaggctgagctcgactccctggtggccgcacgtctggcggcgaac
ccggtgctcgtcgcggggacaccgcgtcgatgccggtggtgtgcgtgcaccctgcagctc
ggccggtgcccgcggtgcgcgggacaggtgacgctggtacacgaacccgtcgcggtcgag
gacgagatcgaggagctgcggcgggaggcgcggctgatggtccgcccggccctcgccccg
atggtcgacctcgtggtggcgcagttggacgagcgaggcctgctgcctggaccgtcgtcg
tccgtcgaggccggcgcacgggcgtccgacgagtgggcggaggcggtccgggcggtgcgg
gccgcgggtccgcccggagtcgcggctccggacgtccggagctgcctcctcgaccaggcc
cggtggcacgcgtcgaacgggggaccggctctcctcgtcccgatcgtcgccgggcacctc
ggccgggtcgccgtgggcgaccacgccgagatcgccggggacctcggtgtgagcacctcg
gcggtcgacgacgcggtggcgttcctgcgggcgagactgcggccctcggtcctgaccacc
ggggcagtggccgccccggtaggggctcctccggacgtcatcgtccggcgccggggagac
ggcctggaggtggtcgtgctcgacggcgccgacctcggactgggcctcgatccggagctc
gatgcgctccggctggcaggcgacagcggtgagtggctggccgaccggtgcgctgacgcc
cgggccctgctggacgtcgtcgaccgacgcgccggtgcgctgcgcagggtggccactgcg
gtggtgcacgcccagcgggacttcgtcctgcacggccgcgccgcgcaccggccgttgacc
cgcgcggccgtcgcggccgccctgggagtgcacccgtcgacggtgagccgcgccgtgcag
ggcgccgtcgtcgcgctgccggacggcggcgtcctgccgctcgccgcgttcttcggcaag
gccgtggcggtcgtcgactgcctggcccggatgctcgcgtcgccggacccgccccgcagc
gatgccgacgccgtggcccggttgggcgtcgccgggcacgtcgtcgcccggcggacggtg
acgaagtaccgccacctgctcgacaccgccgctgccggccgtgcgaagcgatcttctccc
tga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (30)   

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