KEGG   Marinomonas mediterranea: Marme_1917
Entry
Marme_1917        CDS       T01449                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
mme  Marinomonas mediterranea
Pathway
mme03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mme00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Marme_1917
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mme03019]
    Marme_1917
   03009 Ribosome biogenesis [BR:mme03009]
    Marme_1917
Messenger RNA biogenesis [BR:mme03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Marme_1917
Ribosome biogenesis [BR:mme03009]
 Prokaryotic type
  rRNA helicases
   Marme_1917
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 AAA_19
Other DBs
NCBI-ProteinID: ADZ91168
UniProt: F2K2N5
Position
2102466..2104325
AA seq 619 aa
MSDADIQPTFDSLGLAAPILKAVADLGYEQPSAIQAQSIPYLLEGHDLLGQAQTGTGKTA
AFALPLLSRIDVTNKSTQLLVLAPTRELAIQVSEAFQSYARNIPDFHVLPIYGGMSYDTQ
LRQLRRGVQVVVGTPGRVMDHIRRKTLKLDGLQALVLDEADEMLRMGFIDDVEWILEHTP
DGHQTALFSATMPPVIRKVANKHLNNPKEVKILTKTSTATTISQKYWQVSGIHKLDALTR
ILEMNEHDGMIIFVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVDRIKKGQIDI
LVATDVVARGLDVDRVSHVVNYDIPYDTESYVHRIGRTGRAGRSGTAILFVGHRERRMLQ
QIERATRQAIERMQLPTASDINEQRVARFKQRITDTIDNEDLDFFIELAASYQKENDVDP
VKLGAALAHMAQGKTPLLLKELEVRQERRERRDRDDRPDRAERAPRRHRPVTADAMPLKD
NPSMDMQRYVVQVGYRDGVKPGNIVGAIANEADVESRYIGHIEIYEDFATVDLPADLSEQ
AIGKLNKTRICGQRTEISVLKDADALNERASNPSRRPAGGNRRPAGGGERRGDRRPGGGG
DRGRRSNSAPRERRGKRSE
NT seq 1860 nt   +upstreamnt  +downstreamnt
atgtctgacgctgatattcagccaacatttgattcgttgggcttagccgcccctattctt
aaagcggttgccgacctcggttacgagcaaccctcagctatccaagcgcaaagtattcct
taccttcttgaagggcacgatttactagggcaagcgcagacgggtactggtaagactgca
gcgtttgcgctaccgctgctttcacgtatagatgtaacaaacaagtcaactcaactgttg
gtacttgctcctactcgagagcttgctattcaggtttccgaagcgtttcaaagttacgct
cgcaatattcctgatttccacgtactgccgatttacggtggtatgtcttacgatacgcaa
ttacgtcaattgcgtcgcggtgttcaagttgttgtcggcacgccaggtcgtgttatggac
cacatccgccgcaaaacactgaaactagacggcttacaagcacttgtgcttgatgaagcg
gatgaaatgcttcgtatggggttcatcgacgacgtcgaatggattcttgaacatacacct
gacggtcaccaaacagcattgttctcagcaacaatgccacctgtgatccgtaaagtggcc
aacaagcatcttaacaaccctaaagaagttaagattctgacgaagacatctacagcgaca
actatcagtcaaaagtactggcaggtaagcggtattcataagttggatgcgttaacacgt
attcttgaaatgaacgaacacgatggcatgatcatctttgttcgtactaaagctgcaacg
gttgaattggctgaaaagctaaccgctcgtggtcatgcttgtgaagcgttgaacggtgac
atcagtcaaaacttacgtgaacgtactgtagatcgtatcaagaaggggcaaattgacatt
cttgtggcaacagacgttgtagcacgtggtctagatgttgatcgtgtgagtcatgttgta
aactacgacatcccttacgatacagaatcttatgtacaccgtattggtcgtactggccgt
gcgggccgttctggtacagcgatcctattcgttggccatcgtgaacgccgcatgttgcag
caaattgaacgtgcgactcgtcaagcgattgagcgtatgcaattgcctacggcttctgat
atcaacgaacaacgtgttgctcgctttaaacagcgcatcacggacacaattgataacgaa
gatctggatttctttattgaattggctgctagctaccagaaagaaaacgatgtagaccct
gttaagttaggtgcggcattagcgcacatggcacaaggtaaaacaccgttgcttctgaaa
gagcttgaagttcgtcaagagcgtcgtgaacgtcgtgatcgtgatgaccgtcctgatcgt
gcagaacgcgcgcctcgtcgtcatcgtcctgttacggcagatgcgatgccacttaaagac
aatccaagcatggacatgcagcgttacgttgttcaagtcggctaccgtgatggcgttaag
ccgggtaacatcgttggtgcgattgcaaatgaagcggacgttgaaagtcgctacattggt
catatcgaaatctacgaagatttcgcgaccgttgatttgccagcagatctttctgaacag
gctatcggtaagctaaacaaaactcgtatttgtggtcagcgtactgaaatcagtgtcctt
aaagacgctgatgcattaaacgagcgcgcttctaatccgagccgtcgtcctgctggtggt
aatcgtcgtccagctggcggtggtgagcgtcgcggtgatcgtcgtcctggtggcggtggt
gatcgtggaagacgttccaacagtgcaccacgtgaacgtcgtggtaaacgctctgagtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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