KEGG   Methylobacterium mesophilicum: MMSR116_10690
Entry
MMSR116_10690     CDS       T06344                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
mmes  Methylobacterium mesophilicum
Pathway
mmes03030  DNA replication
mmes03410  Base excision repair
mmes03420  Nucleotide excision repair
mmes03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mmes00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MMSR116_10690 (ligA)
   03410 Base excision repair
    MMSR116_10690 (ligA)
   03420 Nucleotide excision repair
    MMSR116_10690 (ligA)
   03430 Mismatch repair
    MMSR116_10690 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mmes03032]
    MMSR116_10690 (ligA)
   03400 DNA repair and recombination proteins [BR:mmes03400]
    MMSR116_10690 (ligA)
Enzymes [BR:mmes01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     MMSR116_10690 (ligA)
DNA replication proteins [BR:mmes03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     MMSR116_10690 (ligA)
DNA repair and recombination proteins [BR:mmes03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     MMSR116_10690 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     MMSR116_10690 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     MMSR116_10690 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      MMSR116_10690 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB BRCT HHH_2 HHH_5 DNA_ligase_ZBD PTCB-BRCT
Other DBs
NCBI-ProteinID: QGY02288
UniProt: A0A6B9FMW3
Position
2228238..2230688
AA seq 816 aa
MAAAKTDPSDLDLTADEARAEHARLSDAILEADRLYYQEDAPEISDAEYDRLRRRLEDFE
TRYPDLAGTGAASTSVGAKPSEKFAKVRHAVPMLSLGNAFDEAEVAEFVARVRRFLGLSD
AAPLAFTAEPKIDGLSLSLRYVDGRLETAATRGDGEIGENVTTNARTVRDIPATLAGSGW
PAICEVRGEVYLSHADFAAINGRQEAAGKPLFANPRNAAAGSLRQLDPAITASRPLRFFA
YAWGELSAPIAGTQSGTLERFAAWGLPVNPRTETFTDTDAMLAHYRRIEADRAGLGYDID
GVVYKVDDLALQRRLGFVSRSPRWALAHKFAAQEATTVVDDIVINVGRTGSLNPLAKLRP
VTVGGVVVSNATLHNEGYVKGVGADGEPIRDGRDIRVGDTVTVVRAGDVIPKVMDVDLSK
RPADSRPYAFPEACPACGSRAVRAVNPRTGRPDAVRRCTGGLICPAQGVERLKHFVSRNG
FDIEGFGETYIEVLFEAGLVHQPADLFRLDFEKLKDAIVARREALSAERRAESGATEPPK
KATKKKGDDEDKAIKNLLAGVEARRRVPMNRLLFALGIPQIGEATAKALAKRFLDMPTLV
AAIREATAAQPGPDWVELTAVPRVGATTRDRLLDLGFPQDDTTKEQAKEPAKERARVSAV
QRENLLAHYGDADAVRAAVERAAGQRPGDAYRLFADDGEIGPVATDALIVFFSEPHNADA
VMALLDEVEVEPLERPASASAFAGQTVVFTGTLEKMTRNEAKAVAERLGAKVSGSVSAKT
DLVVAGPGAGSKLKDAQKHGVRVVSEDDWLGMVAQG
NT seq 2451 nt   +upstreamnt  +downstreamnt
atggccgctgcgaaaaccgatccgtccgatctcgacctcaccgccgacgaggcgcgcgcc
gagcacgcgcgcctgtccgacgcgatcctggaagccgaccggctctactaccaggaggat
gcgcccgagatctcggacgcggaatacgaccgcctccgccggcgactggaggacttcgag
acccgctatcccgatctcgccggcacgggggcggccagcacctcggtgggtgcgaaaccc
tcggagaagttcgcgaaggtgcggcacgccgtgccgatgctttccctcggaaacgccttc
gacgaggcggaggtcgccgagttcgtggcccgggtgcgtcgcttcctcggcctgtccgac
gcggcgcctctcgccttcacggccgagcccaagatcgacggcctgtccctgtcgctgcgc
tacgtcgacggccgcctcgagaccgccgccacccgcggcgacggcgagatcggcgagaac
gtcacgaccaacgcccgcaccgtgcgggacatcccggcgacgctcgcgggctcaggctgg
ccggcaatctgcgaggtgcgcggcgaggtctacctgtcgcacgccgattttgccgccatc
aacggccgccaggaggccgccggcaaaccgctcttcgccaacccccgcaacgcggccgcc
ggcagcctgcgccagctcgacccggcgatcaccgcgtcccggccgctccgattcttcgcc
tatgcctggggcgagctgtcggcacccatcgccgggacgcagtccgggacgctggaacgc
ttcgccgcctgggggctgccggtgaacccgcggaccgagaccttcaccgacacggacgcg
atgctcgcccattaccggcgcatcgaggccgaccgcgccgggctcggctacgacatcgac
ggcgtcgtctacaaggtcgacgacctcgcgctccagcgccggctcggcttcgtctcgcgc
tcgccgcgctgggcgctggcgcacaaattcgccgcgcaggaggcgacgacggtcgtggac
gacatcgtcatcaatgtcggccgcaccggctcgctgaacccgctggcgaagctgcggccc
gtgacggtcggcggcgtggtcgtgtcgaacgccaccctgcacaacgagggctatgtgaag
ggcgtcggggcggacggcgagccgatccgcgacggccgcgacatccgtgtcggcgacacg
gtgacggtggtccgggccggcgatgtcatcccgaaggtgatggacgtcgatctgtcgaag
cgcccggccgattcgcggccctacgccttcccggaggcctgtccggcctgcggcagccgc
gccgtccgcgccgtcaacccgcgcacgggccggcccgacgccgtgcgccgctgcaccggc
ggcctgatctgcccggcgcagggggtggagcggctgaagcacttcgtctcgcgcaacggc
ttcgacatcgaggggttcggcgagacctacatcgaggtgctgttcgaggcgggcctcgtg
caccagcccgccgacctgttccggctcgacttcgagaagctgaaagacgcgatcgtggcg
cggcgcgaggcgctctcggccgagcggcgcgcggaatccggcgcgaccgaaccgccgaag
aaagccaccaagaagaagggcgacgacgaggacaaggcgatcaagaacctgctcgcgggc
gtcgaggcgcgccggcgggtgccgatgaatcgcctgctcttcgccctcggcatcccgcag
atcggcgaggcgaccgccaaggcgctggcgaagcgcttcctcgacatgccgaccctcgtc
gcggcgatccgtgaggcgacggccgcccaacccgggcccgattgggtggagctgaccgcc
gtgccgcgggtcggcgcgacgacccgggaccggctgctcgatctgggcttcccgcaggac
gacacgaccaaggagcaggccaaagagccggccaaggagcgtgcgcgcgtgagcgccgtc
cagcgcgagaacctgctcgcccattacggtgatgccgacgcggtgcgcgcggcggtcgag
cgggcggcgggtcagcgaccgggcgatgcctaccggctcttcgccgacgacggagagatc
ggcccggtggccacagacgcgctgatcgtgttcttctccgagccgcacaatgccgacgcc
gtcatggccctgctcgacgaggtggaggtcgagccgctggagcgccccgcctcggcctcg
gcgttcgccggccagaccgtggtgttcaccggcaccctcgagaagatgacccgcaacgag
gccaaggcggtggccgaacggctcggcgccaaggtctccggttcggtctcggccaaaacc
gatctggtggtggcgggtccgggcgcgggctcgaagctgaaggacgcgcagaagcacggc
gtccgggtcgtgtcggaagacgattggctcgggatggtcgcgcagggttga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (26)   

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