KEGG   Methylobacterium mesophilicum: MMSR116_25650
Entry
MMSR116_25650     CDS       T06344                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
mmes  Methylobacterium mesophilicum
Pathway
mmes03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mmes00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    MMSR116_25650 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mmes03021]
    MMSR116_25650 (rpoB)
   03400 DNA repair and recombination proteins [BR:mmes03400]
    MMSR116_25650 (rpoB)
Enzymes [BR:mmes01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     MMSR116_25650 (rpoB)
Transcription machinery [BR:mmes03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     MMSR116_25650 (rpoB)
DNA repair and recombination proteins [BR:mmes03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      MMSR116_25650 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 RelB DOCK-C2
Other DBs
NCBI-ProteinID: QGY04904
UniProt: A0A6B9FVJ5
Position
5350060..5354184
AA seq 1374 aa
MANTLVGRKRIRKFFGKIKEVAEMPNLIEVQKASYDQFLMVDEPEGGRADEGLQSVFKSV
FPISDFASTALLEFVRYTFEAPKYDVDECRQRGITFAAPLKVTLRLIVFDVDPDTQAKSV
KDIKEQDVYMGDMPLMTENGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAA
RIIPYRGSWLDVEFDAKDIVHVRIDRKRKLPATSLLYALGLDGEEILSTFYNKVVYDRDG
ADWRVPFDAERMKGMKATVDLIDADSGEVVLEAGKKLNARNARQITEKGTKFLKATDEDL
VGQYIAEDLVNTQTGEIWAEAGEEITEKLLKSLEDVGTAELPVLDIDHVNVGPYIRNTLA
VDKNSGREGALFDIYRVMRPGEPPTLDTAEAMFHSLFFDSERYDLSAVGRVKMNMRLDLD
AADTVRTLRKEDMLAVVKALVELRDGKGEVDDIDHLGNRRVRSVGELMENQYRLGLLRME
RAIRERMSQVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRLSA
LGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIETPFR
RVRDGVVTDEVAYLSAMEEAKYYVAQANAQMDEARKLTEDLVVCRRAGEVIVVGPERVDL
MDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRADAPFVGTGMEAVVARDS
GAAIAARRAGIIDQVDATRIVIRATEEADANKPGVDIYRLQKFQRSNQSTCITQKPLVRV
GEFVKKGEIIADGPSTEFGELALGRNVLVAFMPWNGYNFEDSILLSERIVKDDVFTSIHI
EEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVNAGDILVGKITPKGES
PMTPEEKLLRAIFGEKASDVRDTSLRVPPGVTGTIVEVRVFNRHGVDKDERAQAIEREEI
ERLAKDRDDEQAILDRNTYARLADVLIGQAPVAGPKGFKKDTTLTRELINDYPRSQWWQF
AVIDDRLMTEMEAMQKQYDESKKRLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVKRKI
QPGDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWA
AAGLGRKVSKAVDAYLKSQDIAPLREEMKAIYSPGELDGLTDEELAEAGNNVRRGVPMAT
PVFNGAKEADIEQMLEMAGLDRSAQSTLYDGRTGEPFDRKVTMGYIYMLKLHHLVDDKIH
ARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKV
YEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELTSSKKAANDQLEPPADAAE
NT seq 4125 nt   +upstreamnt  +downstreamnt
atggccaacacgctggtcggtcgcaagcgcattcggaagttcttcggcaagatcaaggaa
gttgccgagatgccgaacctcatcgaggttcagaaggcgtcctacgaccagttcctgatg
gtcgacgagcccgagggcgggcgcgccgacgaggggctgcagagcgtgttcaagtcggtg
ttcccgatctccgacttcgcctccacggcgctgctcgagttcgtacgctacaccttcgag
gccccgaagtacgacgtcgacgagtgccgccagcgcggcatcaccttcgcggccccgctg
aaggtcaccctgcgcctcatcgtgttcgacgtcgatcccgacacccaggccaagtcggtc
aaggacatcaaggagcaggacgtctacatgggcgacatgcccctgatgacggagaacggc
accttcatcgtcaacggcaccgagcgcgtcatcgtctcgcagatgcaccgctcgccgggc
gtgttcttcgaccacgacaagggcaagacccattcgtcgggcaagctcctgttcgccgcc
cgcatcatcccgtaccggggctcctggctcgacgtcgagttcgacgccaaggacatcgtg
cacgtccgcatcgaccggaagcgcaagctgccggcgacgtcgctgctctatgccctgggg
ctcgacggtgaggaaatcctgtcgaccttctacaacaaggtcgtctacgaccgcgacggt
gccgactggcgcgtgcccttcgacgccgagcgcatgaagggcatgaaggccacggtcgac
ctaatcgacgccgattccggcgaggtcgtcttggaggccggcaagaagctcaacgcccgc
aacgcccgccagatcaccgagaagggcaccaagttcctcaaggcgaccgacgaggatctc
gtcggccagtacatcgccgaggatctggtcaacacccagaccggcgagatctgggccgag
gccggcgaggagatcaccgagaagctcctgaagagcctggaggatgtcggcaccgccgag
ctgccggtgctcgacatcgaccacgtcaatgtcggtccctacatccgcaacacgctggcg
gtggacaagaattccggccgcgaaggcgcgctgttcgacatctaccgggtcatgcgcccg
ggcgagccgccgaccctcgacaccgccgaggcgatgttccactcgctgttcttcgattcc
gagcgctacgacctctcggcggtcggccgcgtgaagatgaacatgcggctcgacctcgac
gccgccgacacggtccgcacgctccgcaaggaggacatgctggcggtggtcaaggcgctg
gtcgagctgcgcgacggcaagggcgaggtcgacgacatcgaccacctcggcaaccgccgc
gtccgctcggtgggcgagctcatggagaaccagtaccgcctgggcctcctgcgcatggag
cgcgccatccgcgagcgcatgagccaggtcgatatcgacacggtcatgccgcaggacctg
atcaacgcgaagccggcggccgcggccgtgcgcgagttcttcggctcgtcgcagctgtcg
cagttcatggaccagaccaacccgctctccgaggtgacgcacaagcgccgcctctcggcg
cttggcccgggcggtctgacgcgcgaacgcgccggcttcgaggtgcgcgacgtgcacccg
acccactacggccgcatctgcccgatcgagacgccggaaggcccgaacatcggcctgatc
aactcgctcgccaccttcgcgcgggtgaacaagtacggcttcatcgagaccccgttccgc
cgcgtgcgcgacggcgtggtcaccgacgaggtcgcctacctctccgccatggaggaggcg
aagtactacgtcgcccaggcgaacgcacagatggacgaggcccgcaagctcacggaggac
ctcgtggtctgccgccgggccggcgaggtgatcgtcgtgggtcctgagcgcgtcgacctt
atggacgtgtcgccgaagcagctcgtctcggtggccgcggcgctgatcccgttcctggag
aacgacgacgccaaccgcgcgctcatgggctcgaacatgcagcgccaggcggtgccgctg
gtccgcgccgacgccccgttcgtgggcaccggcatggaggcggtggtcgcccgggattcc
ggcgccgccatcgcggcccgccgcgccggcatcatcgaccaggtggacgccacccgtatc
gtcatccgcgccacggaagaggccgacgccaacaagccgggcgtcgacatctaccggctg
cagaagttccagcgctccaaccagtcgacctgcatcacgcagaagcctctggtccgcgtc
ggcgagttcgtgaagaagggcgagatcatcgccgacggaccctcgaccgagttcggcgag
ctggcgctgggccggaacgtgctcgtcgcgttcatgccgtggaacggctacaacttcgag
gactcgattctgctctccgagcggatcgtgaaggatgacgtgttcacctcgatccacatc
gaggagttcgaggtgatggcccgcgacaccaagctcgggcctgaggagatcacccgcgac
atcccgaacgtttcggaagaagcgctcaagaacctcgacgaggccggcatcgtctatatc
ggcgccgaggtgaacgcgggcgacatcctcgtcggcaagatcaccccgaagggcgagagc
ccgatgacgccggaggagaagctgctccgcgccatcttcggcgagaaggcctcggacgtg
cgcgacacctcgctgcgggtgccgccgggcgtcaccggcaccatcgtggaagtccgcgtg
ttcaaccgccacggcgtcgacaaggacgagcgcgcccaggcgatcgagcgcgaggagatc
gagcggctcgccaaggaccgcgacgacgagcaggcgatcctcgaccgcaacacctacgcc
cgcctcgcggacgtgctgatcggtcaggcgccggtggccggcccgaagggcttcaagaag
gacaccacgctcacccgcgagctgatcaacgactacccgcgctcgcaatggtggcagttc
gccgtcatcgacgaccgtctcatgaccgagatggaggcgatgcagaagcagtacgacgag
tcgaagaagcgcctcgagcagcgcttcctcgacaaggtcgagaagctgcagcgcggcgac
gagctgccccccggcgtcatgaagatggtcaaggtcttcgtggcggtgaagcgcaagatc
cagccgggcgacaagatggccggccgtcacggcaacaagggtgtcgtgtcgcggatcgtg
ccgatcgaggacatgccgttcctggaggacgggacgcatgccgacatcgtgctcaacccg
ctgggcgtgccctcgcgcatgaatgtcggccagatcctggagacgcacctgggctgggcg
gctgcgggcctgggtcgcaaggtgtcgaaggcggtggatgcctatctgaagtcgcaggac
atcgcgccgctgcgggaggagatgaaggcgatctactcccccggcgagctcgacggcctg
acggacgaggagctggccgaggccggcaacaacgtccgccgcggcgtgccgatggccact
ccggtgttcaacggcgccaaggaggccgacatcgagcagatgctggagatggccggtctc
gaccgctcggcgcagtcgacgctctatgacgggcgcaccggcgagcccttcgaccgcaag
gtgacgatgggctacatctacatgctgaagctgcaccacctcgtggacgacaagatccac
gcccggtcgatcggcccgtactcgctcgtcacccagcagccgctgggcggcaaggcgcag
ttcggcggtcagcgcttcggcgagatggaggtctgggcgctggaggcctacggcgcggcc
tacacgctgcaggagatgctcacggtgaagtcggacgacgtggccggccgcaccaaggtc
tacgaggcgatcgtccgcggcgacgacaccttcgaggccggcatccccgagtcgttcaac
gtgctcgtcaaggagatgcgctccctcggcctcaacgtcgagctgacgtcctccaagaag
gccgccaacgaccagcttgagcccccggccgacgcggccgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

Download RDF
DBGET integrated database retrieval system