KEGG   Mycobacterium tuberculosis variant microti: RN08_1812
Entry
RN08_1812         CDS       T04291                                 
Name
(GenBank) excinuclease ABC subunit UvrA
  KO
K03701  excinuclease ABC subunit A
Organism
mmic  Mycobacterium tuberculosis variant microti
Pathway
mmic03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mmic00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    RN08_1812
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mmic03400]
    RN08_1812
DNA repair and recombination proteins [BR:mmic03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     RN08_1812
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      RN08_1812
SSDB
Motif
Pfam: UvrA_inter UvrA_DNA-bind ABC_tran ScfRs SMC_N DUF1421 AAA_16 AAA_29 APS_kinase
Other DBs
NCBI-ProteinID: AMC59239
Position
1846616..1848586
AA seq 656 aa
MSFSERDSVADRLIVKGAREHNLRSVDLDLPRDALIVFTGLSGSGKSSLAFDTIFAEGQR
RYVESLSAYARQFLGQMDKPDVDFIEGLSPAVSIDQKSTNRNPRSTVGTITEVYDYLRLL
YARAGTPHCPTCGERVARQTPQQIVDQVLAMPEGTRFLVLAPVVRTRKGEFADLFDKLNA
QGYSRVRVDGVVHPLTDPPKLKKQEKHDIEVVVDRLTVKAAAKRRLTDSVETALNLADGI
VVLEFVDHELGAPHREQRFSEKLACPNGHALAVDDLEPRSFSFNSPYGACPECSGLGIRK
EVDPELVVPDPDRTLAQGAVAPWSNGHTAEYFTRMMAGLGEVLGFDVDTPWRKLPAKARK
AILEGADEQVHVRYRNRYGRTRSYYADFEGVLAFLQRKMSQTESEQMKERYEGFMRDVPC
PVCAGTRLKPEILAVTLAGESKGEHGAKSIAEVCELSIADCADFLNALTLGPREQAIAGQ
VLKEIRSRLGFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIG
LHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGPVSTVAASCTAGPTM
NCYATRIRSPAPTCPAGKALRYRRFGVPSTPVVNSPSSAPASTTCAGSMCLSRWVC
NT seq 1971 nt   +upstreamnt  +downstreamnt
atgagtttcagtgaaagggacagcgtggctgaccgcctgatcgtcaagggtgcgcgcgaa
cacaatctgcgcagcgtcgacctcgacctgccccgcgacgcgctgatcgtcttcaccggg
ttatccggatcgggcaagtcctcgctcgcgttcgacaccatcttcgccgaggggcagcgg
cgttacgtggagtcgctgtcggcctacgcccgccaatttctcgggcagatggacaagccg
gacgtcgacttcatcgaggggctgtctccggcggtgtccatcgaccagaagtcgaccaac
cgcaacccacgatcgacggtcgggaccatcaccgaggtgtacgactacctgcggctgttg
tatgcgcgcgcgggcacgccgcactgcccgacctgcggggagcgagtcgcgcgccaaacc
ccgcaacaaatcgtcgatcaggtgctggccatgccggagggcactcggtttctggtgctg
gccccggtggtgcgtacccgcaagggcgagttcgccgatctgttcgataagctcaacgcc
cagggctacagccgggtgcgggtcgacggtgtggtgcatccgctgaccgatccgccgaag
ctgaaaaagcaggaaaagcacgacatcgaggtggtggtggaccgtctcaccgtcaaggcc
gccgccaagcggcggctcaccgattcggtggaaaccgcgctgaatttggccgacgggatc
gtggtgctcgaattcgtcgatcatgaactgggtgcaccgcatcgcgagcagcggttctcc
gagaagctggcctgccccaacgggcacgcgctggccgtcgacgacctggagccgcggtcg
ttctcgttcaactcgccctacggcgcctgccccgaatgcagtggtctgggcatccgcaag
gaggtcgacccggagctggtggtgcccgatccggatcgcaccctggcgcagggtgcggtg
gcgccgtggtcgaacggccacaccgcggagtacttcacccggatgatggccggccttggc
gaggtgctcgggttcgacgtcgacacgccctggcgcaagctgccggccaaggcccgcaag
gcgattctggaaggcgccgacgagcaggtgcacgtgcgctaccgcaaccgctacggacgc
acccggtcgtattacgccgatttcgagggtgtgctggcgttcctgcaacgcaagatgtcc
caaaccgagtccgagcagatgaaggagcgctacgagggtttcatgcgggacgtgccctgc
ccggtgtgtgcgggcacccggctcaagcccgagattctggcggtgacgctggctggggag
tccaagggggagcacggcgccaagtccatcgccgaggtgtgtgagctgtcgatcgccgac
tgcgcggacttcctgaacgcgctcacgctgggtccgcgcgagcaagcgatcgccgggcag
gtgctcaaggagatccggtcgcggctcgggtttctgctcgacgtcgggctggagtacctg
tcgctgtcccgggcggcggccacgctgtccggcggtgaggcacaacgtatccggctggcc
acccagatcggctccggcctggtgggtgtgctctacgtgctcgacgagccgtccatcggg
ctgcaccagcgcgacaaccgtcgtcttatcgaaaccctcacccggttacgggatttgggg
aacactttgatcgtcgtcgagcacgacgaggacaccatcgagcatgcggactggatcgtc
gacatcggcccggggccggtgagcacggtggccgcatcgtgcacagcgggccctacgatg
aactgctacgcaacaaggattcgatcaccggcgcctacctgtccggccgggaaagcattg
agataccggcgattcggcgttccgtcgacccccgtcgtcaactcaccgtcgtcggcgccc
gcgagcacaacttgcgcgggatcgatgtgtctttcccgctgggtgtgctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (16)   

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