KEGG   Mycobacterium tuberculosis variant microti: RN08_4019
Entry
RN08_4019         CDS       T04291                                 
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
mmic  Mycobacterium tuberculosis variant microti
Brite
KEGG Orthology (KO) [BR:mmic00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mmic03032]
    RN08_4019
   03400 DNA repair and recombination proteins [BR:mmic03400]
    RN08_4019
Enzymes [BR:mmic01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     RN08_4019
DNA replication proteins [BR:mmic03032]
 Prokaryotic type
  DNA Topoisomerases
   RN08_4019
DNA repair and recombination proteins [BR:mmic03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      RN08_4019
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim Toprim_4 DUF2092
Other DBs
NCBI-ProteinID: AMC61446
Position
complement(4056800..4059787)
AA seq 995 aa
MGNLFAAGLRRPALECEIVSCPQARERRRTGIHLGFGSRPRPLPTGAVSIGAGIRDGAWA
QLADPKTKGRGSGGNGSGRRLVIVESPTKARKLASYLGSGYIVESSRGHIRDLPRAASDV
PAKYKSQPWARLGVNVDADFEPLYIISPEKRSTVSELRGLLKDVDELYLATDGDREGEAI
AWHLLETLKPRIPVKRMVFHEITEPAIRAAAEHPRDLDIDLVDAQETRRILDRLYGYEVS
PVLWKKVAPKLSAGRVQSVATRIIVARERDRMAFRSAAYWDILAKLDASVSDPDAAPPTF
SARLTAVAGRRVATGRDFDSLGTLRKGDEVIVLDEGSATALAAGLDGTQLTVASAEEKPY
ARRPYPPFMTSTLQQEASRKLRFSAERTMSIAQRLYENGYITYMRTDSTTLSESAINAAR
TQARQLYGDEYVAPAPRQYTRKVKNAQEAHEAIRPAGETFATPDAVRRELDGPNIDDFRL
YELIWQRTVASQMADARGMTLSLRITGMSGHQEVVFSATGRTLTFPGFLKAYVETVDELV
GGEADDAERRLPHLTPGQRLDIVELTPDGHATNPPARYTEASLVKALEELGIGRPSTYSS
IIKTIQDRGYVHKKGSALVPSWVAFAVTGLLEQHFGRLVDYDFTAAMEDELDEIAAGNER
RTNWLNNFYFGGDHGVPDSVARSGGLKKLVGINLEGIDAREVNSIKLFDDTHGRPIYVRV
GKNGPYLERLVAGDTGEPTPQRANLSDSITPDELTLQVAEELFATPQQGRTLGLDPETGH
EIVAREGRFGPYVTEILPEPAADAAAAAQGVKKRQKAAGPKPRTGSLLRSMDLQTVTLED
ALRLLSLPRVVGVDPASGEEITAQNGRYGPYLKRGNDSRSLVTEDQIFTITLDEALKIYA
EPKRRGRQSASAPPLRELGTDPASGKPMVIKDGRFGPYVTDGETNASLRKGDDVASITDE
RAAELLADRRARGPAKRPARKAARKVPAKKAAKRD
NT seq 2988 nt   +upstreamnt  +downstreamnt
gtgggtaatctgtttgcagccggtttgcgcaggcccgccctagagtgcgagattgtcagt
tgcccacaggcgagggaacgccggcgtaccggaattcacctgggattcggcagtcggccg
cgtcctctacctaccggggcggtctcgataggggccgggataagagatggagcgtgggcg
cagttggctgacccgaaaacgaagggccgtggcagcggcggcaatggcagcggccggcga
ctggtcatcgtcgagtcgcccaccaaggcgcgcaagctggcctcctacctgggctctggc
tacatcgtcgagtcctcccgggggcacatccgtgacttgccgcgggccgcgtcggatgta
cccgcaaagtacaagtcgcagccgtgggcgcggctcggggtcaacgtcgacgccgacttc
gaaccgctctacatcatcagcccggagaaacggagcaccgtcagcgagctcaggggcctg
ctcaaagacgtggacgagctgtatctggccacggatggggaccgtgagggcgaagctatt
gcctggcatctgctggaaaccctcaaaccgcgcataccggtaaagcggatggtcttccac
gagatcaccgaaccggcgatccgcgccgccgccgagcacccccgcgacctagacatcgac
ctggtcgacgcgcaggagacccggcgcatcctggaccggctgtacggctacgaagtcagc
ccagtgctgtggaagaaggtcgcccccaagttgtcggcgggccgggtgcagtcggtggcc
acccgcatcatcgtggcgcgcgaacgcgaccgcatggcgttccgcagcgcggcctactgg
gacatccttgccaagctggatgccagcgtgtccgacccggacgccgcgccgcccaccttc
agcgcccggctgacggccgtggctggccggcgggtggccactggccgcgatttcgactcg
ctgggcacgctgcgcaaaggcgacgaagtcattgtgctcgacgaggggagcgcgaccgcg
ttggccgcgggcctggatggcacgcagctgaccgtggcctcggccgaggagaagccctac
gcccggcgcccgtacccgccgttcatgacctccacgctgcagcaagaggccagccgcaag
ctgcggttctccgccgagcggacgatgagcatcgcccagcggctgtacgaaaacggctac
atcacctatatgcgtaccgactccaccacgctgtcggagtcggcgatcaacgccgcacgt
acccaggcgcgccagctctacggcgacgagtacgtcgcgccggcgccgcgccaatacacc
cgcaaggtgaagaacgcccaggaagcgcacgaggctatccggcccgccggtgaaacgttt
gccaccccggacgcggtgcgtcgcgaactcgacggtcccaacattgatgatttccggctc
tatgagctgatttggcaacgcaccgtagcctcgcagatggccgatgcgcggggcatgacg
ctgagcctgcggatcactggcatgtcggggcaccaggaggtggtgttctccgcgaccgga
cgcaccttgacgttcccgggcttcctcaaggcctacgtggagaccgtggacgagctggtc
ggcggcgaggctgacgatgccgagcggcgactgccccatctgaccccgggtcaacggttg
gacatcgtcgagttgaccccagacggccatgccaccaacccgccggcccgctacaccgag
gcgtcgctggtcaaagcgctcgaggagctgggcatcggccgcccgtcgacctactcgtcg
atcatcaagaccatccaggatcgcggctacgtgcacaagaagggcagtgcactggtgccg
tcatgggtggcgttcgcggtaaccggtctgctcgagcagcatttcggtcggctcgtcgac
tacgacttcaccgcggcgatggaagacgagctcgacgagatcgccgccggcaacgagcgc
cgcaccaactggctcaacaacttctactttggtggcgatcacggtgtgcccgattcggta
gcccgatcgggtggcctcaagaagcttgtcgggatcaatctcgagggcatcgacgcacga
gaagtaaactctatcaagctttttgacgacacccacggacgccccatatatgttcgggtg
ggcaagaacggtccctacctggaacgtttggtggccggcgacaccggtgagcccacgccg
cagcgggccaacctcagcgactcgattaccccggacgagctgactctacaggtggccgaa
gagctctttgccacaccgcaacagggacggactttgggcttggacccagaaaccggccac
gagatcgtggccagggaaggccggtttgggccgtatgtgaccgagatcctgccggagcct
gcggctgatgcggccgcggccgctcagggagtcaagaaacgccagaaggccgccgggccc
aaaccgcgcaccggttcgttgctgcggagcatggacctacagacggtcaccctcgaagac
gcgctgaggctgctgtcactgccgcgcgtggtcggagtggaccccgcctcgggtgaggag
atcaccgcgcagaacgggcgctacggaccgtatctaaagcgcggcaacgattctcgatca
ctggtcaccgaagaccagatattcaccatcacgctcgacgaagccctgaagatctacgca
gagccgaaacgtcgtggccggcaaagcgcttcggctccgccgctgcgcgagctgggaaca
gatccggcgtcgggcaagccaatggtcatcaaggacggccgattcgggccgtacgtcacc
gacggtgagaccaatgccagcctgcgtaagggcgacgacgtggcttccataaccgacgag
cgcgccgccgagctgttggccgatcgccgagcccggggtccggcaaaacggccagccagg
aaagctgcccggaaggtgccggcgaagaaggcagccaagcgcgactag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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