KEGG   Janthinobacterium sp. Marseille: mma_0558
Entry
mma_0558          CDS       T00561                                 
Name
(GenBank) Uncharacterized conserved protein
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
mms  Janthinobacterium sp. Marseille
Pathway
mms03030  DNA replication
mms03430  Mismatch repair
mms03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:mms00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    mma_0558
   03430 Mismatch repair
    mma_0558
   03440 Homologous recombination
    mma_0558
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mms03032]
    mma_0558
   03400 DNA repair and recombination proteins [BR:mms03400]
    mma_0558
Enzymes [BR:mms01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     mma_0558
DNA replication proteins [BR:mms03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     mma_0558
DNA repair and recombination proteins [BR:mms03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     mma_0558
SSDB
Motif
Pfam: RNase_T Rv2179c-like DNA_pol_A_exo1
Other DBs
NCBI-ProteinID: ABR88466
UniProt: A6SVF1
Position
complement(639049..639636)
AA seq 195 aa
MSLNEKLIFVDLETTGANLVNDRITEIGIVAVDPDGCIDRWSTFVNPGRPIPEFIQGLTG
ISDEMVESAPMFETLADTVRERLQDGLFIAHNARFDYGFLHHAFVRSGHVLNAEMLCTVK
LSRALFPAEKKHNLDSLIARHDLIPEARHRALADADLLWQLWRKLNAVVPYEVFSKAVQT
LRQQPKLSIATTTES
NT seq 588 nt   +upstreamnt  +downstreamnt
atgagcttaaacgaaaaactgatatttgttgatctggaaacaaccggtgcgaatctggtc
aatgaccggattaccgagatagggatagtcgcggtcgaccccgatggttgcatcgatcgc
tggtccaccttcgtcaatcccggtcgtcctatccctgaattcatccagggcctgaccggc
atcagcgacgagatggtcgagagcgcacccatgttcgagacactggccgataccgtgcgt
gagcgcctgcaggacggcttgttcatcgcgcacaatgcgcgcttcgactacggcttcctg
caccatgccttcgtccgcagcgggcatgtgctgaatgcggaaatgctgtgcacggtcaaa
ttgtcgcgcgccctgttcccggctgaaaagaaacacaatctggatagcctgattgcgcgc
catgacttgattccggaagcgcgccaccgtgcgctggccgacgctgatttgttgtggcaa
ttatggcgcaaactgaatgcagtcgtcccttacgaagtctttagcaaagccgtccagacc
ctgcgccagcagccaaaattatccatcgcaacgacgacggaaagctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (18)   

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