KEGG   Janthinobacterium sp. Marseille: mma_1376
Entry
mma_1376          CDS       T00561                                 
Symbol
avrC
Name
(GenBank) excinuclease ABC subunit C
  KO
K03703  excinuclease ABC subunit C
Organism
mms  Janthinobacterium sp. Marseille
Pathway
mms03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mms00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    mma_1376 (avrC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mms03400]
    mma_1376 (avrC)
DNA repair and recombination proteins [BR:mms03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     mma_1376 (avrC)
SSDB
Motif
Pfam: UvrC_RNaseH_dom GIY-YIG HHH_5 HHH UVR HHH_2
Other DBs
NCBI-ProteinID: ABR88505
UniProt: A6SXR9
Position
1554890..1556746
AA seq 618 aa
MSETDAPDPRAIVLETVAKLPNLPGVYRYFDAEDNLLYVGKARDLKKRVSSYFLKNLASP
RTALMVERIARLETTVTRSEAEALLLENNLIKTLQPRYNILFRDDKSYPYLKITGQEYPR
MAYYRGAVDKKNQYFGPFPSGWAVKESMQILQKVFLLRTCEDSVFANRTRPCLLHQIHRC
SGPCVNFISKEDYALDVENAAKFLRGRQSEVLETLQGKMLAYAEELKFEQAALVRNQINA
LSRVLHQQSMETGGDADIDIIAVIVQGGRACVNLAMVRGGRHLGDRAYFPTHVDNALASA
EESIATEVMKAFLAQHYIEKFIPGTLILNTEMDEPELMLALMEQCGHRINVVFQPQGQRR
QWLEMAHKGAEISLARLLSEQGSQQARTRMLVDALGIDVPDLESFRVECFDISHTQGEAT
QASCVVFHHHAMQNGEYRRYNINDITPGDDYAAMRQVLLRRYEKVANGDGVMPDVVLIDG
GKGQVEMARQVFVELGLDISLIVGVAKGEGRKVGLETLVFVDGRPPQELGKESGALMLIA
QIRDEAHRFAITGMRAKRAKARQTSRLEEIEGIGAKRRQKLLARFGGLRGVVDASIEDLA
SVEGISRQLAEDIYKQLH
NT seq 1857 nt   +upstreamnt  +downstreamnt
atgtccgagactgacgcaccagatccgcgggcaatcgtgctggaaacggttgcaaagctg
ccgaatttgcccggcgtgtatcgctatttcgatgccgaagataatctgctgtatgtcggt
aaggcgcgcgacctgaagaagcgggtatccagttacttcctgaaaaacctggcaagtccg
cgcactgcactgatggtggaacgcatcgcgcgcctggaaacgacagtgacgcgcagcgag
gcggaagcattgctgctggaaaacaatctcatcaagactttgcagccgcgttacaacatc
ctgttccgcgacgacaaatcctatccctacctgaaaatcaccgggcaggaatatccgcgc
atggcatattaccgtggcgcggtagacaagaaaaaccaatacttcggtcctttccccagc
ggctgggcagtcaaggagtcgatgcagatattgcaaaaggttttcctgttgcgtacctgt
gaagattcggtctttgcaaatcgtacgcggccatgcctcttgcatcagatccatcgctgc
agcgggccttgtgtcaacttcatcagcaaggaagattacgcgctggatgtggaaaatgcc
gcgaaattcctgcgcggtcgccagagcgaagtgctggaaaccttacaaggcaagatgctg
gcctatgccgaagaattgaaattcgaacaggccgcgctggtacgtaaccagatcaatgcc
ttatcgcgcgtcctccaccagcaaagcatggaaaccggcggcgatgcggatatcgatatc
attgcggtgatcgtgcagggcggccgtgcctgcgtcaacctggcgatggtgcgcggtggt
cgtcatttgggtgatcgcgcctacttcccgacacatgttgacaatgcgctggcgagtgcg
gaagagtcgattgcgaccgaggtgatgaaggctttcctcgcgcagcactatatcgaaaaa
ttcattccgggcacgctgatcctgaatacggaaatggacgagccggagctaatgctggcg
ctgatggagcaatgcggccatcgcattaacgtggtgttccagccgcaagggcagcgtcgc
caatggctggagatggcgcacaagggtgcggagatatcgctggcccgcctgttgtccgag
cagggctcacagcaggcacggacgcgcatgctggttgatgccttgggtatagatgtgcct
gacctggaaagctttcgcgttgaatgtttcgatatcagtcatactcagggtgaagcaacg
caagcctcgtgcgtggtattccatcatcatgcgatgcagaatggtgaataccgtcgctac
aatatcaacgatattacgccgggcgatgactacgcagcgatgcgccaggtgctgttgcgc
cgctatgaaaaagtcgcgaatggggatggcgtgatgccggacgtggtgctgatcgacggt
ggcaagggccaagtcgaaatggcgcgtcaggtatttgtcgaactggggctggatatcagc
ctgatcgtcggtgtcgccaagggggaagggcgcaaggtcggccttgagaccctggtgttt
gttgacggccgtccgccccaggaattgggcaaggagtcgggggccctgatgctgattgca
cagatccgcgacgaggcgcaccgtttcgccattaccggcatgcgcgccaagcgtgccaag
gcacgccagacctcgcggctggaagagatcgagggaattggtgccaagcgtcgacaaaag
ctgctggcccgttttggtggcttgcggggcgtagtggacgccagtatcgaggatttggcc
tcggtcgaaggcatttcaaggcaattggctgaagacatttacaagcaattgcattag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (30)   
   KEGG ORTHOLOGY (1)   
   RefGene (27)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (6)   
   Pfam (6)   
All databases (42)   

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