KEGG   Janthinobacterium sp. Marseille: mma_3469
Entry
mma_3469          CDS       T00561                                 
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
mms  Janthinobacterium sp. Marseille
Pathway
mms03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mms00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    mma_3469 (deaD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mms03019]
    mma_3469 (deaD)
   03009 Ribosome biogenesis [BR:mms03009]
    mma_3469 (deaD)
Messenger RNA biogenesis [BR:mms03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     mma_3469 (deaD)
Ribosome biogenesis [BR:mms03009]
 Prokaryotic type
  rRNA helicases
   mma_3469 (deaD)
SSDB
Motif
Pfam: DEAD DbpA Helicase_C ResIII CMS1 UvrA_inter AAA_19 HEM4 adh_short
Other DBs
NCBI-ProteinID: ABR89586
UniProt: A6T3R2
Position
complement(3855395..3857731)
AA seq 778 aa
MSEPSFPLFADLKLSEPLLRVLQELGYESPSPIQAATIPLLLNNRDVLGQAQTGTGKTAS
FALPILARIDIKQTTPQALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQSYGAQL
SALRRGVHVVVGTPGRVIDHLEKGSLDLSRIKTMVLDEADEMLRMGFIDDVETILQKTPE
SRQTALFSATMPSAIKRIATTYLRDPDLITVAAKTGTADNIRQRYWLVSGMQKLDALTRI
LEAENFDGMIIFARTKLGTEELASKLQARGFSAAAINGDIQQQQRERTIQQLKDGKIDIL
VATDVAARGLDVERISHVINYDVPHDPESYTHRIGRTGRAGRSGEAILFIAPRERNLLKA
IERATRQPISVLELPSVEAVNDVRISRFKEQIAETIAAGGLEVFHSLIEDYEREHNVPAV
EIAAALAKLARGDVPLLLDKKNEVRERSWSDDKPVSGGRFERAERFERGDRPERGDRFER
SERPAAPRKERIPRAPDAGMQSFRIEVGHAHGVKPGNIVGAIANEASLDSKYIGRIEIYD
DYSTLDLPENLSPEQFNHLKTVWVAGQQLNISREGDAPAAAPARSANKPAFEKAVASEAA
PAAKPARKEVKERSERAAAPAAPVEVAAAPAKKERERKGSGVDMEPYRVEVGHAHGVKPA
NIVGAIANEAGLEAKYIGRIEIFDDYSLLDLPAGMPTEVFDQLKSVAIGTHKLRLSRSSV
APAPEKTSGKKITLSAPNKGGDRRVAEKGRSSKAPSKRVGTMGGRPAEAAKPKSHRKG
NT seq 2337 nt   +upstreamnt  +downstreamnt
atgtctgaaccatcctttcccctctttgccgacctgaaactgagcgagccgctgctgcgc
gtgctgcaggaattgggttatgaatcgccgtcgccgattcaggccgccactattcccctg
ttgctgaataatcgcgatgtattgggacaggcgcaaaccgggaccggtaaaacagcgtcg
tttgccttgcctatcctggcgcgcattgatatcaaacaaaccacaccgcaagcactggtg
ctggctccgacgcgtgagctggcaatccaggtcgcggaagcattccagcgttatgcgact
tacatcccgggttttcacgtgttgccaatttatggtggtcagagctatggcgcgcagttg
agcgccttgcgccgcggtgtccatgtggtagtgggtacgccgggccgcgtgatcgaccat
ctggaaaaaggctcgctcgacctgtccaggatcaagaccatggtgctggatgaagccgat
gaaatgctgcgtatggggttcatcgacgatgtcgaaaccatcctgcaaaaaacaccggag
tcgcgccagaccgccttgttctcggccaccatgccatcggccatcaaacggatagcgacc
acttacttgcgcgatcctgacctgattacggtcgcagccaagacaggtaccgccgacaac
atccgtcaacgttactggctggtcagcggcatgcaaaagctggatgcattaacccgcatc
ctggaagcggaaaacttcgatggcatgatcatctttgcgcgtaccaagctcggtaccgaa
gaattggccagcaaattgcaggcgcgcggtttctccgccgctgccattaacggcgatatt
cagcagcagcaacgcgagcgcaccatccagcaattaaaggatggaaaaatcgatatcctg
gttgcgaccgacgtcgccgcgcgtggtctcgatgtggagcgtatcagccacgtcattaac
tacgacgtaccgcatgatccggaaagctatacccaccgtatcggccgtactggccgtgcc
ggacgcagcggcgaagcgatcctcttcatcgcgccgcgtgaacgcaatctcttgaaagcg
atcgagcgcgcgacgcgccagccgatctcggtgctggaattgcctagtgtggaagccgtc
aatgatgtgcgtatttcgcgtttcaaggagcagattgcagaaaccattgctgccggcggc
ctcgaagtattccattcgctgatagaagattacgagcgtgaacacaatgtgcctgcggtc
gaaatcgctgcagcgctggccaagctggcgcgtggcgatgtaccgctcttgctggataaa
aagaatgaagtgcgtgaacgctcatggtcggatgacaagccggtatccggcggtcgtttt
gaacgtgcggaacgttttgagcgtggtgatcgtcctgaacgtggagatcgtttcgaacgc
agcgagcgtcctgccgctccgcgcaaggaacgcattccgcgtgcaccggatgccggcatg
caaagtttccgcattgaagtcggccatgcgcacggcgtgaagccgggcaatatcgtcggc
gcgattgcgaatgaagccagcctggattccaaatatataggccgcatcgaaatttacgat
gactacagtacgctggacttgccggagaacctgtcgccggaacaattcaatcacctgaaa
acagtgtgggtagccggtcagcaattgaatattagccgcgaaggcgatgcgcctgcagcc
gcacccgcccggtcagcgaacaagccggccttcgaaaaagccgtcgccagcgaggctgct
ccggccgcaaagccggcacgcaaggaagtgaaagaacgcagcgagcgtgcagctgcacca
gcggcgccggttgaggttgctgccgcaccggccaagaaagagcgtgaacgcaaagggagc
ggggtcgacatggaaccctaccgcgttgaagttggccatgcgcatggtgtcaagccggca
aatatcgtcggtgcgattgccaatgaagcgggactggaggcaaaatatatcggtcgtatc
gaaatttttgacgactacagcttgctcgacttgccggccgggatgccgacagaagtattt
gaccaattgaaatcggtcgccatcggcacccacaagctacgcctcagccgttccagcgta
gcaccggcaccggaaaaaacttcgggcaagaaaattaccctgtcagcgcccaataagggc
ggtgatcgtcgggtagcggagaaggggcgcagcagcaaggcaccatccaagcgtgtggga
accatgggcggccgtcctgctgaagcggccaaaccgaagtcgcatcgcaagggctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (28)   

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