KEGG   Mus musculus (house mouse): 11810
Entry
11810             CDS       T01002                                 
Symbol
Apobec1, APOBEC-1, Cdar1
Name
(RefSeq) apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
  KO
K16932  C->U-editing enzyme APOBEC1 [EC:3.5.4.36]
Organism
mmu  Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    11810 (Apobec1)
Enzymes [BR:mmu01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.36  mRNA(cytosine6666) deaminase
     11810 (Apobec1)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    APOBEC1-ACF complex
     11810 (Apobec1)
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     11810 (Apobec1)
SSDB
Motif
Pfam: APOBEC4_like APOBEC1 NAD1 SNAD4 APOBEC2 APOBEC_N APOBEC4 NAD2 APOBEC3 APOBEC_C AID dCMP_cyt_deam_1 Toxin-deaminase
Other DBs
NCBI-GeneID: 11810
NCBI-ProteinID: NP_001127863
MGI: 103298
Ensembl: ENSMUSG00000040613
UniProt: P51908 Q3U9G8
Position
6:complement(122554755..122580068)
AA seq 229 aa
MSSETGPVAVDPTLRRRIEPHEFEVFFDPRELRKETCLLYEINWGGRHSVWRHTSQNTSN
HVEVNFLEKFTTERYFRPNTRCSITWFLSWSPCGECSRAITEFLSRHPYVTLFIYIARLY
HHTDQRNRQGLRDLISSGVTIQIMTEQEYCYCWRNFVNYPPSNEAYWPRYPHLWVKLYVL
ELYCIILGLPPCLKILRRKQPQLTFFTITLQTCHYQRIPPHLLWATGLK
NT seq 690 nt   +upstreamnt  +downstreamnt
atgagttccgagacaggccctgtagctgttgatcccactctgaggagaagaattgagccc
cacgagtttgaagtcttctttgacccccgggagcttcggaaagagacctgtctgctgtat
gagatcaactggggtggaaggcacagtgtctggcgacacacgagccaaaacaccagcaac
cacgttgaagtcaacttcttagaaaaatttactacagaaagatactttcgtccgaacacc
agatgctccattacctggttcctgtcctggagtccctgcggggagtgctccagggccatt
acagagtttctgagccgacacccctatgtaactctgtttatttacatagcacggctttat
caccacacggatcagcgaaaccgccaaggactcagggaccttattagcagcggtgtgact
atccagatcatgacagagcaagagtattgttactgctggaggaatttcgtcaactacccc
ccttcaaacgaagcttattggccaaggtacccccatctgtgggtgaaactgtatgtactg
gagctctactgcatcattttaggacttccaccctgtttaaaaattttaagaagaaagcaa
cctcaactcacgtttttcacaattactcttcaaacctgccattaccaaaggataccaccc
catctcctttgggctacagggttgaaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (23)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (2)   
   OC (1)   
Protein sequence (10)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (7)   
DNA sequence (27)   
   RefSeq(nuc) (9)   
   GenBank (9)   
   EMBL (9)   
Protein domain (13)   
   Pfam (13)   
All databases (78)   

Download RDF
DBGET integrated database retrieval system