KEGG   Mus musculus (house mouse): 18949
Entry
18949             CDS       T01002                                 
Symbol
Pnn, D12Ertd512e
Name
(RefSeq) pinin
  KO
K13114  pinin
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03013  Nucleocytoplasmic transport
mmu03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    18949 (Pnn)
   03015 mRNA surveillance pathway
    18949 (Pnn)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    18949 (Pnn)
   03041 Spliceosome [BR:mmu03041]
    18949 (Pnn)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     18949 (Pnn)
Spliceosome [BR:mmu03041]
 Complex C
  Other components
   EJC/TREX
    18949 (Pnn)
SSDB
Motif
Pfam: Pinin_SDK_N Pinin_SDK_memA
Other DBs
NCBI-GeneID: 18949
NCBI-ProteinID: NP_032917
MGI: 1100514
Ensembl: ENSMUSG00000020994
UniProt: O35691 Q3TUQ5
Position
12:59113705..59120803
AA seq 726 aa
MAVAVRALQEQLEKAKESLKNVDENIRKLTGRDPNDVRPIQARLLALSGPGGGRGRGSLL
LRRGFSDSGGGPPAKQRDLEGAVSRLGGERRTRRESRQESDPEDDDVKKPALQSSVVATS
KERTRRDLIQDQNMDEKGKQRNRRIFGLLMGTLQKFKQESTVATERQKRRQEIEQKLEVQ
AEEERKQVENERRELFEERRAKQTELRLLEQKVELAQLQEEWNEHNAKIIKYIRTKTKPH
LFYIPGRMCPATQKLIEESQRKMNALFEGRRIEFAEQINKMEARPRRQSMKEKEHQVVRN
EEQKAEQEEGKVAQREEELEETGNQHNDVEVEEAGEEEEKEAGIVHSDAEKEQEEEEQKQ
EMEVKTEEEAEVREGEKQQDSQPEEVMDVLEMVESVKHVIAEQEVMETNQVESIEPSENE
TSKELEPEMEFDVEPDKECKSLSPGKENINSQEVEKESEEKEEKEEKEPEPQPEPVAQPQ
PPPQPLPQSQPHSQPHSQPQPVLQSQPLCQPETLPLAVLQPPPQVIQEQGNLLPERKDFP
LESIKLPEVSVEPVLTVHSENKSKNKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSS
SGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRGRGHNRDRKHRRSVD
RKRRDTSGLERSHKSSKGGSSRDTKGSKDKSSRPDRKRSISESSRSGKRSSRSERDRKSD
RKDKRR
NT seq 2181 nt   +upstreamnt  +downstreamnt
atggcggtcgccgtgagagctttgcaggagcagctagagaaggccaaagagagcctcaag
aatgtggacgagaatatccgcaagctcaccgggcgggacccgaatgatgtgaggcccatc
caagccagattgctggccctttctggtcctggtggaggtagaggacgaggtagcttattg
ctaaggcgtggattctcagatagtggaggaggacccccagccaaacaaagagacctggaa
ggggcagtcagtaggctgggtggggagcgtcggacaagaagagaatcacgccaggagagc
gacccagaagacgatgatgttaaaaagccagcactgcaatcttccgttgtagctacctcc
aaagagcgcacgcgcagagaccttatccaggatcaaaacatggatgagaaggggaagcaa
aggaaccgacgaatatttggcttgttgatgggcactcttcagaaatttaaacaagaatct
actgttgctactgaacggcaaaaaagacgccaagaaattgaacaaaaacttgaagttcag
gctgaagaagagagaaagcaggttgaaaacgagaggcgagaactgtttgaggagagacgt
gctaagcagacggagctgcggcttctggagcagaaggttgagcttgcgcagctgcaagaa
gaatggaatgaacataatgccaagataattaagtatataaggaccaagacaaagccccat
ttgttctatattcctggaagaatgtgtccagctacccaaaagctaatagaagagtcacag
agaaagatgaatgctttatttgaaggtagacgcatcgaatttgcagaacaaataaataaa
atggaggctaggcctagaagacaatcaatgaaggaaaaagagcatcaggtggtgcgtaat
gaagaacagaaggcggaacaagaagagggtaaggtggctcagcgagaggaagagttggag
gagacaggtaatcagcacaatgatgtagaagtagaggaggcaggagaggaagaggagaag
gaagcaggtatagttcatagtgatgcagagaaagaacaggaggaggaggaacaaaagcag
gaaatggaggttaagactgaggaggaggctgaggtaagagaaggtgagaagcagcaggat
agtcagccagaagaagtgatggatgtgctagagatggtggaaagtgtcaaacacgtaatt
gctgagcaggaagtaatggaaactaaccaagttgaaagtatagagccttcagaaaatgaa
actagcaaagaattggagccagagatggaatttgatgttgagccagataaagaatgtaaa
tctctttctcctggaaaagagaatattaattctcaggaagtggaaaaggagtctgaggag
aaagaggaaaaagaagagaaagaacctgagccccaacctgagcctgtggctcagcctcag
cccccacctcagcccctgccccagagccagccccattctcagccccactcccagccccag
cctgtactccagtcccagcctctctgtcagcctgagactttgccattagctgttttgcag
cctccacctcaggttattcaggagcaagggaatctactacctgagcggaaggattttcct
ctagagtctataaaactccctgaggtgtctgtagagccagtcttgacagtacattcagaa
aacaaaagcaagaataagactaggagcaggagcagggggcgagcaaggaataaaacaagc
aagagtagaagtcggagcagcagcagcagtagttccagtagcagctctactagtagcagc
agcgggagcagctccagcagtggcagcagcagtagtcgaagcagctccagcagcagctcc
agcacgagtgggagcagcagcagagacagcagcagcagcactagcagtagcagtgagagt
aggagtcgcagtaggggccgaggacataaccgagataggaagcacagaaggagcgtggac
cggaagcgaagggatacttcaggactagaaagaagtcacaagtcttcaaaaggtggtagt
agtagagatacaaaaggatcaaaggataagagttcccgccctgacagaaaaaggtctata
tcagagagtagtcgatcaggcaaaagatcttcaagaagtgaaagagaccgaaaatcagac
aggaaagacaaaaggcgttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
Protein sequence (4)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (31)   
   RefSeq(nuc) (1)   
   GenBank (15)   
   EMBL (15)   
Protein domain (2)   
   Pfam (2)   
All databases (75)   

Download RDF
DBGET integrated database retrieval system