KEGG   Mus musculus (mouse): 20017Help
Entry
20017             CDS       T01002                                 

Gene name
Polr1b, 128kDa, D630020H17Rik, RPA116, RPA135, RPA2, Rpo1-2
Definition
(RefSeq) polymerase (RNA) I polypeptide B
  KO
K03002  DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Organism
mmu  Mus musculus (mouse)
Pathway
mmu03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    20017 (Polr1b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mmu03021]
    20017 (Polr1b)
Enzymes [BR:mmu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     20017 (Polr1b)
Transcription machinery [BR:mmu03021]
 Eukaryotic type
  RNA polymerase I system
   RNA polymerase I
    Core subunits
     20017 (Polr1b)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpa2_4 RNA_pol_Rpb2_2 DUF1186
Motif
Other DBs
NCBI-GeneID: 20017
NCBI-ProteinID: NP_033112
MGI: 108014
Ensembl: ENSMUSG00000027395
Vega: OTTMUSG00000015413
UniProt: P70700
Position
2; 2 F1
AA seq 1135 aa AA seqDB search
MDVDGRWRNLPSGPSLKHLTDPSYGIPPEQQKAALQDLTRAHVDSFNYAALEGLSHAVQA
IPPFEFAFKDERISLTIVDAVISPPSVPKGTICKDLNVYPAECRGRKSTYRGRLTADISW
AVNGVPKGIIKQFLGYVPIMVKSKLCNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIR
MLIVPRRNFPIAMVRPKWKSRGLGYTQFGVSMRCVREEHSAVNMNLHYVENGTVMLNFIY
RKELFFLPLGFALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEGCHSQKQV
LNYLGECFRVKLSLPDWYPNVEAAEFLLNQCICIHLQSNTDKFYLLCLMTRKLFALARGE
CMDDNPDSLVNQEVLSPGQLFLMFLKEKMENWLVSIKIVLDKRAQKANVSINNENLMKIF
SMGTELTRPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFLRYLSHFRCVHRGAAFAK
MRTTTVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYTASIPALLCGLGVT
PVDTAPCRPYSDCYPVLLDGVMVGWVDKDLAPEVADTLRRFKVLREKRIPPWMEVALIPM
TGKPSLYPGLFLFTTPCRLVRPVQNLELGREELIGTMEQLFMNVAIFEDEVFGGISTHQE
LFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKLYRLQTPQSP
LVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFID
LSEKFKQGEDNLVFGVKPGDPRVMQKLDDDGLPFIGAKLEYGDPYYSYLNLNTGEGFVVY
YKSKENCVVDNIKVCSNDMGSGKFKCICITVRIPRNPTIGDKFASRHGQKGILSRLWPAE
DMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALE
YFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDK
VTNQPLGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHMCVECGSLLSPL
LEKPPPSWSAMRNRKYNCTVCGRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDVI
NT seq 3408 nt NT seq  +upstreamnt  +downstreamnt
atggatgtcgacggccggtggcggaacctgcccagcgggcccagcctaaagcatttaacc
gacccctcgtacgggattcccccagagcagcaaaaggcagctttgcaggacctgacgcgg
gcgcacgtggactccttcaactacgcggcgctggaggggctgagccacgcggtgcaggcc
atacctccctttgaatttgctttcaaagatgagcgcatatctcttaccattgtggatgct
gtcatcagtccaccctcagtgcccaaagggaccatctgcaaagatctcaacgtttatcca
gctgagtgtcgtggccgaaagagcacctaccgagggaggctgacggctgatatcagctgg
gccgtgaatggagtccccaaagggatcattaaacagtttctcggctatgttcccatcatg
gtgaagtccaagctttgcaacttatacaaccttcctcctcgagtcctcattgagcaccat
gaggaggcagaggaaatgggcggttattttataatcaatggcatagaaaaagtcatccgc
atgttgattgtgccccggagaaatttccccatcgccatggtaaggccgaaatggaaaagc
agaggactcggctacactcagtttggggtctccatgcgctgtgtgagagaagagcactcc
gccgtgaacatgaacctgcactatgtggagaacggcacggttatgttaaactttatttac
cgcaaagagctctttttccttcctttgggatttgcacttaaggcactcgtgagcttttct
gattatcagattttccaggagcttatcaagggcaaagaggaggactctttctttaggaat
tctgtttctcagatgctgcggattgtcatagaagagggctgtcactcacagaagcaggtt
cttaactatctgggagaatgcttccgagtgaagctcagccttcctgattggtaccctaac
gtggaagctgccgagttcctgcttaaccagtgcatctgcatccacctgcagtccaacact
gacaagttctacctgctctgcctcatgacccggaagctgttcgctttagccagaggggag
tgcatggacgacaaccctgatagcctagtgaaccaagaggtcctcagccctgggcagctc
ttcctgatgtttctgaaggaaaaaatggaaaactggctagtgtctattaaaatagtttta
gataagagggctcagaaggccaatgtttccataaacaacgaaaatttgatgaagattttt
agtatgggaacagagctaacaagaccatttgaatatcttcttgctactgggaatctgcgt
tctaaaacaggtctcggcttcctgcaagattctggcctgtgtgttgtggctgacaagctg
aacttccttcgctacctctcccatttccgctgtgtgcacagaggggctgcctttgccaag
atgaggaccaccaccgtgcgcaggctgctgccagaatcctggggcttcctctgccctgtg
cacactccagacggggcgccttgtgggctgttgaaccacttgactgccgtgtgtgaggtt
gttaccaagtttgtgtacacggcatctattccagccttgctctgtggcttaggagtcact
cctgttgatacagcgccatgtcgaccgtacagtgactgctaccctgtcctgctggatggc
gtcatggtgggctgggtggataaggaccttgctcctgaagttgcagacactctccgtcga
ttcaaggtgttgagagaaaaaagaattcctccctggatggaggtggccctgattcccatg
acaggaaaaccaagtctgtacccaggtctgttcctctttaccactccctgcaggctggtg
aggcctgtgcagaacttggaactgggcagagaagagctcattggaaccatggaacagctc
ttcatgaacgtcgccatctttgaggacgaggtgtttggtggcatctccacacaccaggag
ctcttccctcacagcctgctgagcgtgatcgccaacttcatccccttctcggatcacaac
cagagtcctcggaacatgtaccagtgccagatgggtaagcagaccatgggctttccgctg
ctcacttaccaaaaccgatcagataataaactctatcgactccaaacccctcagagccct
ctagtgagaccgtgcatgtatgatttctatgacatggacaactatccgatcgggacaaac
gccattgtagctgtgatctcctacactggctatgatatggaggacgccatgattgtcaac
aaggcttcctgggaacgaggcttcgctcatggaagcgtctacaagtctgagttcatagac
ctctcagagaagtttaagcagggagaggataacctggtgttcggggtcaagcctggtgac
cctcgggtgatgcagaagctggacgatgatgggttgccattcataggcgcaaagctggag
tatggcgacccttactacagctacctcaaccttaacactggggaaggcttcgtggtttac
tacaagagtaaagaaaactgtgttgtggacaacatcaaagtgtgtagtaacgacatgggc
agtgggaagttcaagtgtatctgcatcacagtccgcatcccccggaacccaaccattgga
gataagtttgccagccgacatggtcagaagggcattttgagcagattgtggccagccgag
gacatgcctttcactgagagtggcatgatgccggacattctgtttaatcctcacgggttt
ccctcccgtatgaccataggtatgttaatcgagagcatggctgggaagtctgcagctttg
cacggtctctgccatgatgctacacccttcatcttctccgaggagaactctgccttagag
tactttggtgagatgttaaaggctgctggctacaacttctacggcaccgagagactgtat
agtggcatcagtgggatggagctggaggctgacatcttcattggtgtggtttattaccag
cgcttacgacacatggtgtcagacaaatttcaagtcagaacaactggagccagggacaaa
gtcaccaaccagcccctcgggggacgaaatgttcagggtggaatccgctttggggagatg
gagcgggatgctctgttggcacacggtacgtctttccttcttcatgaccggcttttcaac
tgctctgaccgttctgtcgctcacatgtgtgtagagtgtggcagtttgctttctccgcta
cttgagaagcctcctccgtcttggtctgcgatgcgcaacagaaagtacaactgcactgtc
tgtggccgcagtgacaccatcgacaccgtctctgtgccgtatgtcttccggtactttgta
gctgagctggcagccatgaacatcaaagtgaaactggatgtcatctga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
   VEGA (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (21)   
   RefSeq(nuc) (3)   
   GenBank (9)   
   EMBL (9)   
Protein domain (7)   
   Pfam (7)   
All databases (59)   

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