KEGG   Mus musculus (house mouse): 20346
Entry
20346             CDS       T01002                                 
Symbol
Sema3a, Hsema-I, SEMA1, SemD, Semad, coll-1
Name
(RefSeq) sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A
  KO
K06840  semaphorin 3
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu04360  Axon guidance
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09150 Organismal Systems
  09158 Development and regeneration
   04360 Axon guidance
    20346 (Sema3a)
SSDB
Motif
Pfam: Sema Ig_6 ig PSI Ig_3 V-set Ig_2 I-set
Other DBs
NCBI-GeneID: 20346
NCBI-ProteinID: NP_001230001
MGI: 107558
Ensembl: ENSMUSG00000028883
UniProt: O08665 A0A803Z7F8
Structure
Position
5:13174789..13653453
AA seq 772 aa
MGWFTGIACLFWGVLLTARANYANGKNNVPRLKLSYKEMLESNNVITFNGLANSSSYHTF
LLDEERSRLYVGAKDHIFSFNLVNIKDFQKIVWPVSYTRRDECKWAGKDILKECANFIKV
LEAYNQTHLYACGTGAFHPICTYIEVGHHPEDNIFKLQDSHFENGRGKSPYDPKLLTASL
LIDGELYSGTAADFMGRDFAIFRTLGHHHPIRTEQHDSRWLNDPRFISAHLIPESDNPED
DKVYFFFRENAIDGEHSGKATHARIGQICKNDFGGHRSLVNKWTTFLKARLICSVPGPNG
IDTHFDELQDVFLMNSKDPKNPIVYGVFTTSSNIFKGSAVCMYSMSDVRRVFLGPYAHRD
GPNYQWVPYQGRVPYPRPGTCPSKTFGGFDSTKDLPDDVITFARSHPAMYNPVFPINNRP
IMIKTDVNYQFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEM
TVFREPTTISAMELSTKQQQLYIGSTAGVAQLPLHRCDIYGKACAECCLARDPYCAWDGS
SCSRYFPTAKRRTRRQDIRNGDPLTHCSDLQHHDNHHGPSLEERIIYGVENSSTFLECSP
KSQRALVYWQFQRRNEDRKEEIRMGDHIIRTEQGLLLRSLQKKDSGNYLCHAVEHGFMQT
LLKVTLEVIDTEHLEELLHKDDDGDGSKIKEMSSSMTPSQKVWYRDFMQLINHPNLNTMD
EFCEQVWKRDRKQRRQRPGHSQGSSNKWKHMQESKKGRNRRTHEFERAPRSV
NT seq 2319 nt   +upstreamnt  +downstreamnt
atgggctggttcactgggattgcctgtcttttctggggtgtattacttacagccagagca
aactatgcaaacggaaagaacaatgtgccaagactgaaattatcgtacaaagaaatgttg
gaatccaacaatgtgatcacttttaatggcttggccaacagctccagttaccacaccttc
cttctggatgaagaacggagtagactatatgttggagcaaaagatcatatattttcattc
aacttggtgaacattaaagattttcaaaagattgtgtggccagtatcttacacaaggaga
gatgaatgcaaatgggctggaaaagatatcctgaaagaatgtgccaatttcatcaaggtc
ctggaggcttataatcagactcacttgtatgcctgtggaactggggctttccatccaatc
tgcacctatattgaagttggacatcatcctgaggacaacatttttaagctgcaggactca
cattttgaaaacggtcgtgggaagagcccttatgatcccaaactactgactgcctctctt
ctaatagacggtgagttgtactctggaactgctgcggacttcatgggacgggacttcgct
atcttcagaacactggggcaccatcaccccatcaggacggagcagcatgactcccggtgg
ctcaatgatcctagattcatcagtgcccatctcatcccagagagtgacaaccctgaagat
gacaaagtatattttttcttccgagaaaatgcaatagacggagaacactctggaaaagcc
actcatgctagaataggtcagatatgcaagaatgactttggtggacacagaagtcttgtg
aataaatggacaacattcctaaaagcacgcctgatttgctctgtgcccggtcccaatggc
attgacacccattttgatgaattgcaggatgtattcctaatgaactctaaagatcctaaa
aatccgatcgtctatggagtgttcacaacatcaagcaacatctttaagggatctgctgtg
tgcatgtacagcatgagtgatgtaagaagggtgttccttggtccatatgctcacagagat
ggtcccaactatcagtgggtgccttaccaaggaagagtcccttatccacggccaggaact
tgtcccagtaaaacatttggcggatttgactccacaaaggaccttcctgatgatgtcata
acttttgcaagaagtcatccagccatgtacaacccagtgtttcctataaataatcgcccg
atcatgatcaaaacagatgtaaattatcagttcacacaaattgttgtagaccgagtggat
gcagaagatggccagtatgatgttatgttcatcggaacagatgttggaaccgttcttaaa
gtggtttcagtccccaaggagacttggcatgacctagaagaagttcttctggaagaaatg
accgtcttccgggaaccaacaactatttcggcaatggagctttctactaaacagcaacag
ctgtacattggctcaactgcgggagtggcacagcttcctctacaccgctgtgacatctat
ggcaaagcctgtgcagaatgctgcctcgctcgggacccttactgtgcctgggatgggtcc
tcatgctcacgctattttcctactgcaaagaggcgcacaagacgacaagatataaggaat
ggagacccactgactcactgctctgacttgcagcaccatgataatcatcatgggcccagc
cttgaagagagaatcatctatggagtggaaaacagtagtacattcttggaatgcagtccg
aagtcacagagagccttggtatattggcaatttcagaggagaaatgaagatcgaaaagag
gagatcagaatgggtgatcatatcatcaggacagaacaagggctcctgctccgtagcctg
cagaagaaggattcaggcaattacctgtgtcacgctgtggaacacggattcatgcaaact
cttcttaaggtaaccctggaagtcattgacacagaacatttggaagaacttcttcataaa
gatgacgatggagatggctctaagataaaagaaatgtcgagcagcatgacgcccagccag
aaagtctggtaccgagacttcatgcagctcattaaccaccccaacctgaacacgatggat
gagttctgtgaacaagtgtggaaaagggaccgaaagcaacgccgacaaaggccggggcac
tctcaagggagcagcaacaagtggaagcacatgcaagagagcaagaaaggtagaaacagg
aggacccacgagtttgagcgggcacccagaagtgtctga

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Ontology (1)   
   KEGG BRITE (1)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
Protein sequence (13)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (10)   
DNA sequence (40)   
   RefSeq(nuc) (10)   
   GenBank (15)   
   EMBL (15)   
3D Structure (4)   
   PDB (4)   
Protein domain (8)   
   Pfam (8)   
All databases (82)   

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