KEGG   Mus musculus (house mouse): 20586
Entry
20586             CDS       T01002                                 
Symbol
Smarca4, BAF190A, Brg1, HP1-BP72, SNF2beta, SW1/SNF, b2b508.1Clo, b2b692Clo
Name
(RefSeq) transcription activator BRG1 isoform 3
  KO
K11647  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03082  ATP-dependent chromatin remodeling
mmu04714  Thermogenesis
mmu05225  Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    20586 (Smarca4)
 09150 Organismal Systems
  09159 Environmental adaptation
   04714 Thermogenesis
    20586 (Smarca4)
 09160 Human Diseases
  09162 Cancer: specific types
   05225 Hepatocellular carcinoma
    20586 (Smarca4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mmu03021]
    20586 (Smarca4)
   03036 Chromosome and associated proteins [BR:mmu03036]
    20586 (Smarca4)
Transcription machinery [BR:mmu03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     20586 (Smarca4)
Chromosome and associated proteins [BR:mmu03036]
 Eukaryotic type
  Histone modification proteins
   HDAC complexes
    REST complex
     20586 (Smarca4)
  Chromatin remodeling factors
   BAF complex
    20586 (Smarca4)
   PBAF complex
    20586 (Smarca4)
   GBAF(ncBAF) complex
    20586 (Smarca4)
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C SnAC Bromodomain HSA BRK QLQ ResIII HDA2-3 DEAD Htt_C-HEAT
Other DBs
NCBI-GeneID: 20586
NCBI-ProteinID: NP_001167550
MGI: 88192
Ensembl: ENSMUSG00000032187
UniProt: Q3TKT4
Position
9:21527377..21615526
AA seq 1613 aa
MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPMPTQG
PGGYPQDNMHQMHKPMESMHEKGMPDDPRYNQMKGMGMRSGAHTGMAPPPSPMDQHSQGY
PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGSDPQALGQQNRGPTPFNQNQLHQL
RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPTLPPPSVSATGPGPGPGPGPGP
GPGPAPPNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQ
KLIPPQPTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPLVPLHQKQSRITPIQKPRG
LDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEV
VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL
QHAKDFREYHRSVTGKLQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK
LIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIG
PDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEES
GSEEEEEEEEEEQPQPAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGV
SQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADE
MGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAA
RRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTH
YVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEE
TILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTD
GSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASG
KFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLK
TFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVR
VLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEE
DEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAE
VERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQKKSSRKR
KRDSEAGSSTPTTSTRSRDKDEESKKQKKRGRPPAEKLSPNPPNLTKKMKKIVDAVIKYK
DSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQ
NAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEDDSEGEESEEEEEGEEEGSESESRSVK
VKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQEEDRSGSGSEED
NT seq 4842 nt   +upstreamnt  +downstreamnt
atgtctactccagacccacccttgggtgggactcctcggcctggtccttccccaggccct
ggtccttcacctggtgcaatgctgggtcctagccctggcccctcaccaggttctgcccac
agcatgatggggccaagcccaggacctccttcagcaggacatcccatgcccacccagggg
cctggagggtacccccaggacaacatgcatcagatgcacaagcctatggagtccatgcac
gagaagggcatgcctgatgacccacgatacaaccagatgaaagggatgggcatgcggtca
ggggcccacacaggcatggcacctccacctagtcccatggaccagcattctcaaggttac
ccctcacccctcggcggctctgaacatgcctccagtcctgtcccagccagtggcccatct
tcaggcccccagatgtcctctgggccaggaggggccccactagatggttctgatccccag
gccttgggacagcaaaacagaggcccaaccccatttaaccagaaccagctgcatcaactc
agagctcagataatggcctacaagatgttggccaggggccagccattgcccgaccacctg
cagatggccgtgcaaggcaagcggccgatgcctggaatgcagcaacagatgccaacacta
cctccaccctcagtgtccgccacaggacccggacctggacccggccctggccctggccct
ggcccaggaccagcccctccaaattacagtagaccccatggtatgggagggcccaacatg
cctcccccaggaccctcaggtgtgccccccgggatgcctggtcagccgcctggagggcct
cccaagccatggcctgaaggacccatggccaatgctgctgcccccacaagcaccccacag
aagctgattcctccgcaaccaacaggccgtccttcacctgcacctcctgctgtcccgcct
gctgcctcacctgtaatgccaccacaaacacagtccccagggcagccagcccagcctgct
ccattggtgccactgcaccagaagcagagccgaatcacccccatccagaagccccgaggc
cttgaccctgtggagatcctacaagagcgggagtacaggcttcaggctcgaatcgcacac
agaattcaggaacttgaaaacctccctgggtccctggctggggaccttcgaaccaaagca
accatcgaactcaaggcccttaggttgctgaacttccagaggcagctgcgccaggaggtg
gtggtgtgcatgcgaagagacacagccctggagacagccctcaatgccaaggcctacaag
cgcagcaaacgtcagtcactacgggaggcccgcatcactgagaagttggagaagcagcag
aagattgaacaggagcgcaagcgccgccagaagcaccaggagtacctcaacagcattctg
cagcatgccaaggacttcagggagtatcacagatcagtcacaggcaaactccagaaactc
accaaggctgtggccacctaccatgccaacactgagcgggagcagaagaaagaaaatgag
cgcattgagaaggagcgaatgcggaggcttatggctgaagatgaggagggctaccgcaaa
ctcattgaccagaagaaggacaagcgcctggcctaccttctgcagcagacagatgagtat
gtggccaacctcacagagctggtgcggcagcacaaagctgcccaggttgccaaggagaag
aagaagaaaaagaaaaagaagaaggcagaaaatgctgaaggacagacacctgctattgga
ccagatggtgagcctctggatgagaccagccagatgagtgacctccctgtgaaggtgatc
cacgtggagagtggcaagatcctcactggcacagatgccccaaaagccgggcagctggaa
gcctggcttgaaatgaacccagggtatgaagtagcccccaggtcagacagtgaagaaagt
ggctctgaagaggaggaggaggaggaggaagaggagcagcctcagcccgcacagccccct
acactgcctgtggaagaaaagaagaagattccagacccagacagcgatgatgtctctgag
gtggacgcccgacacattattgagaacgccaagcaagatgtggacgatgagtacggtgtg
tcccaggcccttgctcgtggcctgcagtcttactatgctgtggcccatgcagtcacagag
agagtagataagcagtccgccctcatggtcaacggtgtcctcaaacagtaccagatcaag
ggtttggagtggctggtgtccctgtacaacaacaacctgaatggcatcctggctgatgag
atggggctggggaagaccatccagaccatcgcgctcatcacatacctcatggagcacaag
cgcatcaacgggcctttcctcatcatcgtgcctctctcgacactgtcaaactgggcgtat
gaatttgacaagtgggccccctctgtggtgaaggtttcttacaagggctctccagctgca
aggcgagcttttgtcccacagcttcgcagtgggaagttcaacgtcttactgaccacctat
gaatatatcatcaaagacaagcatatcctagccaagatccgctggaagtacatgattgtg
gatgaaggccaccgcatgaaaaaccaccactgcaagttgacgcaggtccttaacacacac
tacgtggcccctcggcgcctgcttcttacaggcacaccactgcagaacaagctaccggag
ctctgggccctgcttaacttcctgctccccactatcttcaagagctgcagcaccttcgaa
cagtggttcaatgcaccctttgccatgactggagaaaaggtggacctgaatgaagaggag
actatcctcattattcgtcgcctacacaaagttctgcggcccttcctgctgcggcggctc
aagaaggaagttgaagcccagctccctgagaaggtagagtatgtcatcaaatgcgacatg
tcagccctgcagcgtgtgctgtaccgtcacatgcaggccaaaggtgtgctgctgactgac
ggctccgagaaggacaagaagggcaaaggtggcaccaagacactgatgaacactattatg
caactgcgtaagatctgcaaccacccctacatgttccagcacatcgaggagtccttttct
gagcacttggggttcaccggcggcatcgtgcaaggattggacctttaccgtgcctcaggg
aaatttgaacttcttgatagaattctacccaaactccgtgcaacgaaccataaagtgctc
ctcttttgccaaatgacctccctcatgaccatcatggaagactactttgcataccgtggc
ttcaaatacctcaggcttgatggaaccacaaaagcagaagaccggggcatgctgttgaaa
acctttaatgaacctggctctgagtatttcattttcctgctcagtacccgtgctgggggg
ctgggcctgaatctgcagtcagctgacactgtgatcatctttgacagtgactggaatccc
caccaggacctgcaagcacaggatcgagcccatcgcattggacagcagaatgaggtgcgt
gttcttcgcctgtgcacggtcaacagtgtggaagagaagatactggctgctgccaaatac
aaactcaatgtggatcagaaggtgatccaggcaggcatgttcgaccagaagtcgtccagc
catgagaggcgtgccttcctgcaggccatcctggagcacgaggagcaggatgaggaggaa
gatgaggtgcctgatgatgagaccgtcaaccagatgattgcccggcacgaagaagagttt
gacctcttcatgcgcatggacttggaccgccggcgtgaagaagcccgcaaccccaagcgg
aagccacgcctgatggaagaggatgagctcccatcctggatcatcaaggatgatgccgag
gtggagcggctgacatgtgaagaggaagaggagaagatgttcggccgtggttctcgccac
cgcaaggaggtagactacagcgactcactgacagagaagcagtggctcaaggctatcgag
gagggcacgctggaggagatcgaagaggaggtccggcagaagaaatcttcacgtaagcgt
aagcgagacagcgaggccggctcctccaccccgaccaccagcacccgcagccgtgacaag
gatgaggagagcaagaagcagaagaaacgtgggcggccacctgctgagaagctgtcccca
aacccacctaacctcaccaagaagatgaagaagatcgtggatgctgtgatcaagtacaaa
gacagcagtggacgtcagctcagcgaggtgttcatccagctcccctctcgcaaggagctt
cctgagtactatgagctcatccgaaagcctgtggacttcaagaagatcaaggaacgcatc
cgaaaccacaagtaccgcagcctcaatgacctggagaaggatgtgatgctgctgtgccag
aacgctcagacgttcaacctcgagggttccctgatctatgaggactccatcgtcctgcag
tctgtcttcaccagcgtacggcagaagattgagaaggaggacgacagtgaaggcgaggaa
agcgaggaggaggaggagggcgaggaggaaggctccgagtctgagtcccgctccgtcaag
gtgaagatcaagctgggccgcaaggagaaggcccaggaccgactcaaggggggccgccgg
cggccaagccggggatcccgggccaagccggttgtgagtgacgatgacagtgaggaggag
caggaggaggaccgctcaggaagtggcagtgaggaagactga

  All links  
Gene (39)   
   RefGene (33)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (2)   
   OC (1)   
Protein sequence (16)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (14)   
DNA sequence (54)   
   RefSeq(nuc) (14)   
   GenBank (20)   
   EMBL (20)   
Protein domain (11)   
   Pfam (11)   
All databases (120)   

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