KEGG T01002: 20679

Mus musculus (house mouse): 20679

Entry

20679             CDS       T01002

Symbol

Sox6, SOX-LZ

Name

(RefSeq) transcription factor SOX-6 isoform 1

K09269

transcription factor SOX5/6/13 (SOX group D)

Organism

mmu Mus musculus (house mouse)

Brite

KEGG Orthology (KO) [BR:mmu00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:mmu03000]
    20679 (Sox6)
Transcription factors [BR:mmu03000]
Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   HMG SOX
    20679 (Sox6)

SSDB

Motif

Pfam:

HMG_box HMG_WDHD1 HMG_box_2

Other DBs

NCBI-GeneID:

NCBI-ProteinID:

MGI:

Ensembl:

UniProt:

Position

7:complement(115070107..115639186)

AA seq 827 aa
MSSKQATSPFACTADGEEAMTQDLTSREKEEGSDQHPASHLPLHPIMHNKPHSEELPTLV
STIQQDADWDSVLSSQQRMESENNKLCSLYSFRNTSTSPHKPDEGSREREIMNSVTFGTP
ERRKGSLADVVDTLKQKKLEEMTRTEQEDSSCMEKLLSKDWKEKMERLNTSELLGEIKGT
PESLAEKERQLSTMITQLISLREQLLAAHDEQKKLAASQIEKQRQQMDLARQQQEQIARQ
QQQLLQQQHKINLLQQQIQVQGHMPPLMIPIFPHDQRTLAAAAAAQQGFLFPPGITYKPG
DNYPVQFIPSTMAAAAASGLSPLQLQKGHVSHPQINPRLKGISDRFGRNLDPSEHGGGHS
YNHRQIEQLYAAQLASMQVSPGAKMPSTPQPPNSAGAVSPTGIKNEKRGTSPVTQVKDET
TAQPLNLSSRPKTAEPVKSPTSPTQNLFPASKTSPVNLPNKSSIPSPIGGSLGRGSSLDI
LSSLNSPALFGDQDTVMKAIQEARKMREQIQREQQQQPHGVDGKLSSMNNMGLSNCRTEK
ERTRFENLGPQLTGKSSEDGKLGPGVIDLTRPEDAEGSKAMNGSAAKLQQYYCWPTGGAT
VAEARVYRDARGRASSEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKS
MSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPKRTCIVDGKKLRIGEYKQLMRSRRQEM
RQFFTVGQQPQMPITTGTGVVYPGAITMATTTPSPQMTSDCSSTSASPEPSLPVIQSTYG
MKMDGASLAGNDMINGEDEMEAYDDYEDDPKSDYSSENEAPEPVSAN

NT seq 2484 nt +upstreamnt +downstreamnt
atgtcttccaagcaagccacctctccatttgcctgtacagcggatggagaggaagcaatg
acccaggacttgacctcaagggaaaaggaagagggcagtgatcaacacccggcctcccat
ctgcctctgcaccccataatgcacaacaaacctcactctgaggagctgcctacacttgtc
agtaccattcaacaagatgctgactgggacagcgttctgtcatctcagcaaagaatggag
tcagagaataataagttatgttccctatattccttccgaaatacgtctacctcaccacat
aagcctgacgaagggagtcgggagcgtgaaataatgaacagtgttacttttggaaccccg
gaacgccgcaaagggagccttgccgatgtggtggatacgctgaagcagaagaagctggag
gagatgactcggacagaacaagaggattcctcctgcatggaaaaactactttcaaaagat
tggaaggaaaaaatggaaagactaaatacgagtgaacttcttggagaaatcaaaggtaca
cctgagagccttgcagagaaagaacggcaactctccaccatgattacccagctgatcagc
ttgcgggagcagctcctggcagcccatgatgaacagaaaaagctggcagcatcgcagatc
gagaaacagcggcagcaaatggaccttgctcgccaacagcaagaacagatcgcaagacaa
cagcagcaacttctacagcagcagcacaagattaatctcctgcagcaacagatccaggtt
caggggcacatgcctccgctcatgatcccaatttttccacatgaccagcggaccttggca
gcagctgctgctgcccaacagggattcctcttcccccctggaataacatacaagccaggt
gataactaccccgtacagttcattccgtcaacaatggcagctgctgctgcttctggactc
agccctttacagcttcagaagggtcatgtttcccacccacaaattaacccaaggctaaag
ggcataagtgaccgttttggcaggaatttggacccctctgaacatggtggtggccactct
tacaaccacagacagattgagcagctctatgccgctcagctggccagcatgcaggtgtca
cctggagcaaagatgccatcaactccacagccaccaaactcggcaggggcagtctcacct
actgggataaaaaatgaaaagagagggaccagccctgtaactcaagttaaggatgaaaca
acagcccagccgctgaatctctcatcccggcctaagacagcagagcctgtgaagtcccca
acatctcccacccagaacctcttcccagccagcaaaaccagccctgtcaacctgccaaac
aaaagcagcatccccagccccattggaggaagcctggggagaggatcctctctagatata
ctatccagtctcaactctcctgccctgtttggggaccaggacacagtgatgaaagccatt
caggaggctcggaagatgcgagaacagatccagcgggagcaacaacagcagccacacgga
gttgatgggaaactgtcctccatgaacaacatggggctgagcaactgcaggactgagaag
gaaagaacacgctttgagaacctgggtccccaattaacaggaaagtcaagtgaagatgga
aaactgggcccgggtgtcatcgatctcactcggccagaggacgcagaaggaagcaaagca
atgaatggctctgcagctaaactacagcagtattattgttggccaacaggaggcgccact
gtggctgaagcccgtgtctacagggatgcccgcggccgtgccagcagcgaaccccacatc
aagcgaccaatgaatgcgttcatggtttgggcaaaggacgaaaggaggaaaattcttcag
gccttccctgacatgcataactccaacattagcaaaatcttaggatctcgctggaaatcc
atgtccaaccaggagaagcaaccttactatgaagaacaggcccggctaagcaaaatccac
ctagagaagtacccaaactacaagtacaaaccccggccgaagcgcacatgcatcgtggat
ggcaagaagctccggattggggagtacaagcaactgatgcgctcgcgaaggcaggagatg
cgacagttcttcactgtggggcaacagcctcagatgcccatcaccacaggaacaggtgtt
gtgtatcctggtgctattactatggcaacgaccacaccatcacctcagatgacatctgac
tgctctagcacctctgccagccccgagcccagcctccctgtcatccagagcacgtatggt
atgaagatggacggcgcaagcctggctgggaacgacatgattaatggagaggatgaaatg
gaagcctatgacgactacgaagatgatcccaaatcagactatagcagcgagaatgaggcc
ccagagcctgtcagtgccaactga

All links

Gene (10)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (1)   
   OC (1)   
Protein sequence (59)   
   UniProt (3)   
   SWISS-PROT (1)   
   RefSeq(pep) (55)   
DNA sequence (87)   
   RefSeq(nuc) (55)   
   GenBank (16)   
   EMBL (16)   
Protein domain (3)   
   Pfam (3)   
All databases (159)   

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