KEGG   Mus musculus (house mouse): 217351
Entry
217351            CDS       T01002                                 
Symbol
Tnrc6c, 9930033H14Rik, mKIAA1582
Name
(RefSeq) trinucleotide repeat containing 6C
  KO
K18412  trinucleotide repeat-containing gene 6 protein
Organism
mmu  Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    217351 (Tnrc6c)
   03036 Chromosome and associated proteins [BR:mmu03036]
    217351 (Tnrc6c)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     217351 (Tnrc6c)
Chromosome and associated proteins [BR:mmu03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    217351 (Tnrc6c)
SSDB
Motif
Pfam: TNRC6-PABC_bdg M_domain Ago_hook UBA_7 RRM_1 UBA RRM_occluded
Other DBs
NCBI-GeneID: 217351
NCBI-ProteinID: NP_932139
MGI: 2443265
Ensembl: ENSMUSG00000025571
UniProt: Q3UHC0 B1ATC3
Position
11:117544529..117654265
AA seq 1900 aa
MEEKKKKKQEDKKKKEGAQKKAADQKTKVPELTKTCSSQPQPAGTSPSTSTSTISSGSNG
KRASACGQQPAASRYLPREVPPRFRQQEQKQLLKRGQPLPTGGLTSLNSAQAAGPAGASP
PPLPGAGAQQHPSKLQQDLGHSGLVDHYENSHWGQHPSYRSEANCSWDKVIIDRTEPEVW
PSIPVTETESASECPTDTDSASNCGSENSSMATGSAQSSFPSHLKKTNGSHGTNGALVQS
PSNQSALGAGGTNGNGGVARVWGVATSSSSGLAHCSVGGGDGKMDNMIGDGRSQNCWGAS
NSNAGINLNLNPNANPAAWPVLGHEGTVATGNPSSICSPVSAIGQNMGSQNGNPVGALGA
WGNLLPQESAEPQTSTSQNVSFSVQPQNLNTDGPNNTNPMNSSPNPINAMQTNGLPNWGM
AVGMGAIIPPHLQGLPGANGSSVSQGSGSGGEGMGSSVWGLSPGNPATGSTNCGFSQGNG
DTVNSALSAKQNGSSSAVQKEGNGGNAWDSGPPAGPGILAWGRGSGTNGIGNIHSGAWGH
PSRSSSNGVNGEWGKPPNQHSSSDISGKGSTGWDSASAASQTPALQPGSEHMNSWAKATS
SGTTASEGSSDGSGNHNEGSTGREGTGEGRRRDKGVLDQGHIQLPRNDLDPRVLSNSGWG
QTPVKQNTAWEFEESPRSERKNDNGTEAWGSIATQPSNSGGKTDGSIMNSTNTSSVSGWV
SSPPAAVPANTSWGDSNNKAPSGPGVWGDSISSTAVNNAAATKSGHAWSGTVNQEDKSPT
WGEPQKPKSQNWGDGQRANPAWSTGAGDWADSSSVLGHLGDGKKNGSGWDADGNRSGSGW
NDATRCGTSGWGSGTNAKVNPGTNWGESLKPGPQQNWAHKPQDNNVSNWGGAASVKQTGT
GWIGGPLPVKQKDSSEATGWEEPSPPSIRRKMEIDDGTSAWGDPSTYNNKTVNMWDRNNP
VIQSSTTAPATPTTPTSSSTTHRAETPPSHQAGTQLNRSPLLGPVSSGWGEMPSVHSKAE
NSWGEPSSPCTLVDNGTAAWGKPPSSGSGWDHPAEPVVPFGRASAPAAAPALCKPASKSM
QEGWGSGADEMNLGTSQWEDEDGDMWNNAASQESSSSCSSWGNTSKKGLQKGMKTPGKQD
EAWIMSRLIKQLTDMGFPREPAEEALKSNSMNLDQAMSALLEKKVDMDKRGLGMTDYNGM
VTKPLGCRPPISKESSMDRPTFLDKLTLSFSNQDGGLVEEPTTSPFLPSPSLKLPLSNSA
LPSQALGGVASGLGMQNLNSSRQIPSGNLGVFGNSGAAQARTMQQPPVQPLNSSQPSLRA
QVPQFLSPQVQAQLLQFAAKNIGLSPALLTSPINPQHMTMLNQLYQLQLAYQRLQIQQQM
LQAQRNVSGPMRQQEQQVARTITNLQQQIQQHQRQLAQALLVKQPPPPPPPPHLSLHPSA
GKSGMESFPPPPQAPGLPDLQTKEQQSSPNTFAPYPLAGLNPNMNVNSIDMSSGLSVKDP
SQSQSRLPQWTHPNSMGNLSSAASPLDQNPSKHGAIPGGLSIGPPGKSSIDDSYGRYDLI
QNSESPASPPVAVPHSWSRAKSDSDKISNGSSISWPPEFHPGVPWKGLQNIDPENDPDVT
PGSVPTGPTINTTIQDVNRYLLKSGGKLSDIKSTWSSGPASHTQASLSHELWKVPRNTTA
PTRPPPGLANPKPSSTWGTSPLGWTSSYSSGSAWSTDTSGRTSSWLVLRNLTPQIDGSTL
RTLCLQHGPLITFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVN
RFLAQGQALPPTSSWQSSSGGSQPRLGTSGSTHGLVRSDTAHWNTPCLSGKGSSELLWGG
VPQYSSSLWGPPSAEDARVIGSPTPLNTLLPGDLLSGESI
NT seq 5703 nt   +upstreamnt  +downstreamnt
atggaagaaaagaaaaagaaaaagcaggaagacaagaaaaagaaggaaggtgctcagaaa
aaggctgctgatcaaaaaaccaaagtgccagaacttactaagacctgttcaagccagccc
caacctgccggtaccagtcccagtacttccaccagcactatttctagcggcagcaatggc
aaacgtgcatctgcctgtggccagcagccagctgcatcccgttacctgcctcgggaggtg
cctccacgctttcgccagcaagaacagaagcagctgttaaagagaggccagccattgccc
acagggggtctgaccagtttgaactcagcacaggctgctggacctgcaggggccagccct
cctcccctccctggagctggggcacagcaacatcccagcaagctccaacaagatcttggt
cacagtggattggtagatcattatgaaaattcccactggggacagcatccctcttacaga
agtgaagccaactgcagctgggataaagtgataatagacaggactgagccggaggtgtgg
ccgtccatcccagtaactgagacggaatctgcctcagaatgtcctaccgacactgactct
gcctccaactgtggctcagagaacagtagcatggctacagggagtgcccagagcagcttc
ccgagccacctgaagaagacaaacggcagtcatggcaccaatggcgcactcgtccaaagc
ccttctaaccagagtgcccttggggcaggaggaaccaatgggaacgggggcgtggccaga
gtgtggggtgtagccacaagctccagctctggcctggctcactgctctgttggtggtgga
gatgggaaaatggacaacatgatcggagatgggagaagtcagaattgttggggtgcttct
aactccaatgcgggcattaatctcaaccttaatccaaatgccaacccagctgcctggcct
gtactcgggcatgaaggaactgtggcaacaggcaacccttccagtatttgcagtccagtc
agtgccataggtcagaatatgggcagccagaatgggaacccagtgggcgccctaggtgcc
tggggaaacttgctgccccaagagagcgcagaaccacagacatccacttctcagaatgtg
tctttcagcgtacaacctcagaaccttaacactgatggaccaaataacactaaccccatg
aactcttcaccaaaccctatcaatgcaatgcagacaaacggactgccaaactggggcatg
gctgttggtatgggggccatcatcccaccccacctgcaaggccttcctggtgctaacgga
tcatcagtctctcaaggcagtgggagtggtggggaaggaatgggcagttctgtgtgggga
ctgtcccctggtaaccctgccacaggaagtaccaattgtgggttcagtcaagggaatgga
gacactgtgaactcagcattaagtgctaagcagaacggatccagcagtgctgtgcagaag
gaagggaatggagggaacgcctgggactcagggcctcctgcagggcctggcatccttgcc
tggggaaggggcagtggcaccaatggcattggtaatatccattcaggagcttggggccat
cccagccgaagttcttctaatggtgtgaatggggagtgggggaagcccccaaaccagcat
tccagtagtgacatcagtgggaaaggatcaacagggtgggacagtgccagtgctgccagc
cagacccctgccctgcagcctggcagtgaacacatgaactcgtgggccaaagccacatct
tctggaactacagcaagtgaaggaagcagtgatgggtccggcaatcacaatgaaggaagc
actgggagggaagggacaggagagggccggaggcgagacaaaggggttctagaccaaggg
cacatccagttgccaaggaatgaccttgacccaagagttctgtctaacagtggttgggga
cagactcccgtaaagcaaaacactgcctgggaatttgaagagtcccctaggtctgaaagg
aaaaatgacaatgggacagaggcctggggtagtatagctactcagccttcaaactcaggg
gggaagactgatgggtccatcatgaacagtacaaatacctcttcagtatcggggtgggtc
agctcaccacctgccgccgtgccagcaaacacaagctggggagacagcaacaacaaagcg
ccaagtggcccaggagtttggggggactcaataagctctactgctgttaacaatgctgct
gccaccaagagtggccatgcttggagtgggactgtaaaccaagaggacaaatcacccacc
tggggtgagcctcagaagcccaaatcccaaaactggggagatggacaaagagcaaaccca
gcctggagcacaggggcaggagactgggcagattcatcatctgtccttggacatctaggg
gatggaaagaaaaatggatctggatgggatgctgatggtaataggtcagggtctggttgg
aatgatgccacgagatgtgggaccagtggctggggcagtggcacaaatgctaaggtgaat
ccaggtacaaactggggggagtctctcaagcctggtccccagcagaactgggctcataag
ccccaagacaacaatgtgagtaactggggaggagctgcttctgttaagcagacagggaca
gggtggattggggggccactgccagtcaagcagaaggacagcagtgaggcgactggctgg
gaggagccttccccaccctccatccgacgcaaaatggaaattgatgatggtacctcagct
tggggggacccaagcacctacaacaataaaactgtaaacatgtgggacagaaacaatcca
gtcatccagagcagtaccacagcccctgccacccccacgacccccacctcgagcagcacc
acacaccgggccgagacgccgccttcacaccaggctggcactcagctgaatcggtcacca
ctgctcgggccagtttcatccggctggggagagatgcccagtgttcactccaaggccgag
aactcctggggagagccatcttccccttgtaccctggtggacaatggcacagcagcgtgg
gggaagcctcccagcagtggcagtgggtgggatcatcctgctgagccggtggtgccattt
ggaagagccagcgctcctgctgccgccccagccctgtgcaaaccagcttccaaatctatg
caagaaggctggggcagcggtgcggatgaaatgaacctgggcaccagccagtgggaggat
gaggacggggacatgtggaacaacgctgcctcccaagaaagcagctcatcctgcagctcc
tggggcaacacctcaaaaaaaggacttcagaagggcatgaagactcctggcaagcaggat
gaggcctggatcatgagccggctgatcaaacaactcacagacatgggcttcccgagagag
ccagccgaagaggccttgaaaagcaacagtatgaaccttgaccaggccatgagtgctctg
ctggaaaagaaggtggacatggacaaacgtggactgggaatgaccgactacaatggaatg
gtcaccaaacccctcggctgccgcccaccaatctccaaagagtcttccatggaccgcccc
accttccttgacaagctcaccctttctttctccaatcaggatggcggcctcgtggaagag
cccacgacttcaccgtttttgccttccccaagcctgaagctccccctttccaacagtgca
ctccccagtcaggccctgggtggggttgcctcagggctgggcatgcaaaacttgaactct
tctagacagatcccgagtggcaatctgggtgtgtttggcaatagcggagcagcacaagcc
aggaccatgcagcagccgccagtgcagcctcttaattcctcccagcccagcctccgcgct
caagtgcctcagtttctatcccctcaggttcaagcacagcttttgcagtttgcagcaaaa
aacattggtctcagccctgcactattaacctcgccaattaaccctcagcatatgacgatg
ttgaaccagctctatcagctgcagctggcataccaacgtttacaaatccagcagcagatg
ttacaggcccagcggaatgtttccggacccatgaggcaacaggagcagcaagttgcgcgc
acaatcactaatctgcagcagcagatccagcagcaccagcgccagctggcccaggccctg
cttgtaaagcagccaccacctccgccacccccgccgcacctgtctctgcacccctctgca
ggcaaatcgggcatggagagcttcccccctcccccccaggctcccggccttcccgacctg
cagaccaaagagcagcagtcttcacccaacacctttgctccttatcctcttgctggattg
aacccgaacatgaatgtcaacagcatagacatgagcagtggcttgtctgtgaaggacccg
tcgcagtcccagtcacgcctgcctcagtggacacatcccaactccatgggtaacttgtct
agtgctgcttctcccctggaccagaatcctagcaagcatggtgctatccctggaggtcta
agcatcgggcctccaggtaagtcctccattgatgactcttacggccggtacgatttaatt
cagaacagtgagtcaccagccagtcctcccgtagctgttccccatagctggtcacgtgcc
aaatctgacagtgataaaatctcaaatggctccagcatcagctggcccccagaattccac
cctggagttccatggaaaggacttcagaacattgaccctgagaatgaccctgatgtcacg
cctggcagtgtccctacaggacctaccatcaacaccaccatccaggatgtcaaccgctac
ctcctcaagagtggaggtaagctgtctgatattaaatcaacatggtcctcaggcccagcc
tctcacacgcaagcctctctgtctcatgagctgtggaaggtacccagaaacactactgca
cccaccaggccgcctccaggcttagccaatcccaagccttcctccacctggggcaccagc
cccctcggctggaccagctcctactcctcgggttctgcatggagcactgacacctcagga
agaacaagcagctggctcgttctgcgcaatctcacaccccagatcgatggttctacactt
cggacgctgtgtctgcagcatggacctctcatcacattccacctgaacctaacccagggc
aacgctgtagtccgctacagttctaaggaagaagccgccaaggcccagaagtctctgcac
atgtgtgtactgggaaacaccaccatcttggctgagtttgccggggaagaagaagtgaac
cggttcctggcccaaggccaagccctcccacccacctccagctggcagtccagcagcggg
ggcagccagcccagactgggcacctcgggcagcacccatggcctagtgcgcagcgacact
gcccactggaacaccccatgcctgagtggcaaaggcagcagtgagctgctgtggggtggg
gtcccccagtactccagcagcctgtggggcccgcccagtgctgaggacgccagagtgatc
ggcagccccacgcctctcaacactctgctgcctggggacctgctcagcggcgagtccatc
tag

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Ontology (3)   
   KEGG BRITE (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (44)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (38)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (13)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (10)   
DNA sequence (36)   
   RefSeq(nuc) (10)   
   GenBank (13)   
   EMBL (13)   
Protein domain (7)   
   Pfam (7)   
All databases (104)   

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