KEGG   Mus musculus (house mouse): 218035
Entry
218035            CDS       T01002                                 
Symbol
Vps41, Vam2, mVam2
Name
(RefSeq) VPS41 HOPS complex subunit
  KO
K20184  vacuolar protein sorting-associated protein 41
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu04140  Autophagy - animal
mmu04148  Efferocytosis
mmu05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    218035 (Vps41)
   04148 Efferocytosis
    218035 (Vps41)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    218035 (Vps41)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:mmu04131]
    218035 (Vps41)
Membrane trafficking [BR:mmu04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    218035 (Vps41)
SSDB
Motif
Pfam: Clathrin Vps39_2 Vps39_1 ANAPC4_WD40 zf-RING_5 Frtz RIG-I_C zf-rbx1
Other DBs
NCBI-GeneID: 218035
NCBI-ProteinID: NP_742118
MGI: 1929215
Ensembl: ENSMUSG00000041236
UniProt: Q5KU39
Position
13:18901462..19050981
AA seq 853 aa
MAEAEEQETESLEESTDESEEESEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLALG
THYGKVYLLDVQGNITQKFDVSPVKINQISLDDSGEHMGVCSEDGKLQVFGLYSGEEFHE
TFDCPIKIIAVHPQFVRSSCKQFVTGGKKLLLFERTWMNRWKSSVLHEGEGNIRSVKWRG
HLIAWANNMGVKVFDITSKQRISNVPRDDISLRPDMYPCSLCWKDNVTLIIGWGTSIKIC
SVKERHASEMRDLPSRYVEIVSQFETEFYISGLAPLCDQLVVLSYVKEVSEKTEREYCAR
PRLDIIQPLPETCEEISSDALTVRGFQENECRDYHLEYSEGESLFYVVSPRDVVVAKERD
QDDHIDWLLEKKKYEEALMAAEISQRNIKRHKILDIGLAYVNHLVERGEYDMAARKCQKI
LGKNASLWEYEVYKFKEIGQLKAISPYLPRGDPVLKPLIYEMILHEFLESDYEGFATLIR
EWPGDLYNNSVIVQAVRDHLKKDSQNKTLLKTLAELYTYDKNYGNALEIYLTLRHKDVFQ
LIHKHNLFSSIKDKIVLLMDFDSEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHKL
FKRDHHKGQRYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLLS
RMGNSRSALKMIMEELHDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTHV
DPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQMK
GVLVDEENICESCLSPILPTDAAKPFSVVVFHCRHMFHKECLPMPSMNAPAQYCNICSAK
NRGPGSAILEMKK
NT seq 2562 nt   +upstreamnt  +downstreamnt
atggcggaagcagaggagcaggaaaccgagtctcttgaagaatctacggatgagtcagag
gaagaaagtgaagaggaacccaaactgaagtatgaaaggctttccaatggggtgacagag
attcttcagaaggatgcagcaagctgtatgacggtccatgacaagtttttggcactggga
acacattatggcaaggtttatttacttgatgtccagggaaacatcactcagaagtttgat
gtaagtcctgtgaagataaaccaaattagcttggatgacagtggagaacacatgggagtg
tgttcagaggatggcaagctgcaggtctttgggctgtattctggagaagaatttcacgag
acttttgactgtcccattaaaatcattgctgtgcacccacagttcgtgagatccagttgt
aagcagtttgtgactggcgggaaaaagctgctgctgtttgaacggacctggatgaacaga
tggaagtcttctgtgctacacgaaggggaaggaaacataaggagtgtgaagtggagaggc
catctgattgcttgggccaacaatatgggtgtgaaggtttttgacatcacctcaaagcaa
agaatcagcaatgtgccccgagatgacataagtcttcgcccagacatgtacccctgcagc
ctctgctggaaggacaatgtgacactcattattggctggggaacttccatcaagatatgc
tcagtgaaggaacgccacgccagtgagatgagggatctgccaagccgatatgttgagata
gtgtctcagtttgaaactgaattctacattagtggacttgcacctctctgtgatcagctt
gttgtactttcctacgtaaaggaggtttcagaaaaaacggaaagagaatactgtgcaaga
cctagactggacatcatccagccacttccggagacttgtgaagagatctcctccgatgct
ttgacagtcagaggctttcaggagaatgaatgtagggattaccacttagaatactccgag
ggggaatcactcttctatgtcgtgagtccaagagatgtcgtcgtagccaaggaacgagac
caggatgatcacatcgattggctccttgagaagaagaaatatgaagaagctttgatggct
gctgaaattagccaaaggaacattaaacgacataagattctggatattgggttggcatat
gtaaaccacctggtggagagaggagagtacgacatggctgcaagaaaatgccagaaaatt
cttgggaaaaatgcatccctctgggaatacgaagtttacaaatttaaagaaattgggcag
cttaaagcaattagtccctatttacctcgaggggacccagttctgaaaccactcatctat
gaaatgattttgcacgaatttctggaaagtgactatgagggctttgccacattgatcaga
gagtggcctggagatctatataacaattccgtgatagttcaggcagttcgagaccacctg
aagaaggacagtcagaacaaaacgttattgaaaacactggcagaattgtacacctatgac
aaaaattatggcaatgctctggaaatatacttaacgttaagacataaagatgttttccaa
ctgatacacaagcataatcttttcagctccatcaaggataaaattgtgttattaatggat
tttgattcagagaaagctgttgacatgcttttggacaatgaagataaaatttcaattaaa
aaagtggtagaagaattagaagacagaccagaactgcagcatgtgtatttgcacaagctc
ttcaagagagaccatcataagggacagcgctaccatgaaaagcagatcagtctgtatgcc
gagtatgaccgaccaaacctgcttccctttctccgagacagtacccattgcccacttgaa
aaggcacttgagatctgtcaacaaagaaactttgtagaagagacagtttaccttctgagc
cgaatgggaaacagtagaagtgccctcaagatgattatggaggaattgcatgatgttgat
aaagcaattgagtttgccaaggaacaagatgatggagagctctgggaagatctgattcta
tactccatcgacaaaccaccatttatcactggcttgttgaacaacattggcacacatgtg
gacccgattctacttatccaccgaattaaggaaggaatggagattcccaatttgagagat
tccttggttaaaattctgcaagattataacttgcagattctgcttcgagaaggctgcaag
aaaatcctcgtagctgactcattgtcgttgctgaaaaaaatgcaccgaacccaaatgaaa
ggcgttctggttgatgaagagaatatctgtgaatcatgcctttctcccatcctcccaaca
gatgcagcgaagcccttcagcgtggtggtcttccactgccggcacatgttccacaaggag
tgcctgcctatgccgagcatgaatgctcctgcacaatactgcaacatctgtagtgctaag
aaccgtgggcctggaagtgccatcctggagatgaagaagtag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (4)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (32)   
   RefSeq(nuc) (2)   
   GenBank (15)   
   EMBL (15)   
Protein domain (8)   
   Pfam (8)   
All databases (67)   

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