KEGG   Mus musculus (house mouse): 230393
Entry
230393            CDS       T01002                                 
Symbol
Focad
Name
(RefSeq) focadhesin isoform 1
  KO
K27498  focadhesin
Organism
mmu  Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    230393 (Focad)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     230393 (Focad)
SSDB
Motif
Pfam: Focadhesin DUF3730
Other DBs
NCBI-GeneID: 230393
NCBI-ProteinID: NP_001074653
MGI: 2676921
Ensembl: ENSMUSG00000038368
UniProt: A2AKG8
Position
4:88012858..88329248
AA seq 1798 aa
MSDDIKKRFDFPNSLIQSQAVGHLIAAVLKEHGVSEKIHQSTNQTAALNLLWEKCCSDHV
VVRTACSEGLVALVAQGHAEFSYVLNGILNLTPSARNMSGLIKALMKLLQMQALREGQSG
EKDIQDIYSIRNPPQPLITVLEHRPDCWPLLLQQLTAFFQQCPERSEASCVQIMAPFLWY
LYCEPSQLEEYAKLRLSLLKVLLQPRGVCEEAQLSVREQSTLQLCCSMLPCLQMKDLMQT
TEMMLFVEEVYLSLLRHPGFWKSQLTQLTLQLLCICEVSLKITGECSSLIHLLERSVELL
GEDFPVELVIIGIALLLLQMPASQQKPLLNLALKLLSLTEGQKIPKASLLLLVPLLQILS
STALEDCLAMGEEGPSRQQLALSLVEVLQKERHGDDSHTISCRLAFPVSSMYGSIFTAWR
ILDVIGEESATSDWLATVESLLSATTVIPPHVFLLLAYLLVEDVGQNLQQILRVTTQLAQ
ADSSQVPNLIPVLMFKLGRPLDPVSYNHILYTLPTLGVHKVCVGQILRVIQLLGTTPRLR
AVTLRLLTSLWEKQDRVYPELQRFMAVSDAPSLSVGKELQWEKLIAKAASIRDICKQRPY
QHGADMLAAISQVLNECTKPDQATPAALVLQGLHALCQAEVVCIRSTWNALSPKLSCDMR
PLILKTLSELFSLVPSLTVNTVEYENFKVQVLSFLWTHTQNKNPTVASAAYKSLSHFSAG
EHTILHLPEKIRPEMPVPGELDEEESVDLSIPGACFLRLLTITAPSVLPALEEFFTSLVR
QEMVNMPRGIYHSALKGGVRSDQGKTVAGIPNFILKTYETNKQPGLKPGLAGGMLFCYDL
AMYQSKDGKPLNRLMASRGRSFKQTTLALIHEVHVQLSEWHRAIFLPQAWLAYMTRAYHA
ILQGRIAELELQLQHGKEGPEEVQYKRSTAWLWVRDMLTDEITKTAAKESPVVKANALLA
LSSLAVVVSKHEASLCSDSDGVLEIQPNFLPVKEWVSMVLNTLLVIVDSHYHPSGQLFTC
FYHKSYSGENTASAIARSAAATALSLLVPVFIISCKEKVEEILNMLTARLPGKPSADESQ
AVQIHMGLALGMFLSRLCEEKLSDMSGQQMNLLLMKSLDALESCCFDPSLEYNTGCILGV
GLALSLMSHSSHTESRVHVAASLRKLSTYLDESGSQSRTFQEVLVYTLSCVCTSAFSAGI
IEAAEAEDIMSKLQLLVENNQQTSGFALALGNLVYGLSVCGHGKAEDLGNRLRPSWIKVV
LTEGAPTMLCLAALHGLVALVGSDVDVMQLKSEAIQNTHFQARLNEVIRTLTEVISVSGV
IGLQSNAIWLLGHLHLSTLSSNQSRTSVPTDYSYLPEGSFIRAAIGFFITGGKKGPEAVP
PSLLKVVMKPIATVGESYQYPPANLAALLSPLMRLNFGEEIQQLCLEIAVTQAPSSQSAA
SLLGLWVMPPLIHGLSLNIKKYLLVSMPLWAKHVSDEQIQGFVENLMVEVFKTASQPCHP
EMCLSALQGLSQAMKLPSPSHHLWSLLCDATGRIFDLLPNRIRRNDLELYISIAKCLSEM
TDEGVNQVSQITKDNIEKAAFVKLYLVSQGRLPLMSLTDLLTAAMQHPEKETLAWMILHS
LYQARIVNHANTGVLKRLEWLLELMGYVRNIAYQSAPIQNVAPEEALDFLMLIFAAAVVA
WADHEAPLLLGLSASWLPWHQQNGPGGPAAALLGRSPMHRVTVQEVLTQLPRSMLLLLQK
EPWKEQTQKFIDWLLSIMEIPNKAFAAKSKDLLKATLLSLRVLPEFKKKAVWTRAYGW
NT seq 5397 nt   +upstreamnt  +downstreamnt
atgtcagatgacatcaagaaaaggtttgattttccgaattctcttatccagtctcaggct
gtaggtcatcttattgctgctgtcttaaaagaacatggtgtttcagaaaagatacaccaa
tccacaaaccagacggctgccttgaacttgctgtgggagaagtgctgcagtgaccatgtg
gttgtgcggacagcctgcagcgagggactggtggcacttgtcgcccagggtcatgcagag
ttcagctatgttctcaatgggatactcaacctgactccttctgccaggaatatgtctggt
ttgataaaagcccttatgaaattattacagatgcaagcactgagagaaggacaaagcggg
gaaaaggacattcaggatatatattctatcagaaatcctcctcagcctttgatcaccgtg
cttgagcacaggcctgattgctggccactactcctgcagcagctgacagcttttttccag
caatgccctgaaaggtcagaagcttcatgtgtccaaataatggcgccatttctgtggtat
ctctactgtgaaccatctcagctagaggaatatgccaagcttcgactgtcgctgctcaaa
gtcttacttcagcccagaggtgtctgtgaggaagcgcagctgtcagtacgggagcagagc
acccttcagctgtgctgtagcatgcttccatgcttgcagatgaaagatctgatgcagaca
acagaaatgatgctgttcgtcgaggaagtatatctaagccttctgcggcatcctggcttc
tggaaaagtcagcttacccagctgacccttcagctgctgtgcatctgtgaagtcagctta
aagataactggggagtgctcatctttaattcaccttttagagcgcagtgttgaacttctt
ggggaggattttcctgtcgaattggtcattattggaattgctttactacttctacagatg
ccagcaagtcaacagaagccactattaaacctagctttgaagctcctctcgcttactgag
ggtcagaaaatcccgaaggcatccctgctgctcctggtgcctcttctgcagatactatct
tccactgccctggaagactgtctggccatgggtgaggaaggcccctccaggcagcagtta
gctctcagtcttgtggaagtgctacagaaagagcgtcacggagacgacagccacacgatc
tcctgcaggcttgcttttcctgtaagcagcatgtatggctccatcttcacagcctggagg
attcttgacgtcattggagaagagtctgccactagtgactggctggctacagtggagtcc
ttgctctctgccactacagtgatccccccacacgttttcttactgctggcttacctgctt
gttgaagatgtagggcagaatcttcagcagatactgagggtcaccacacagttagctcaa
gcagattcctctcaggtaccaaatctgattccagttttgatgttcaaattgggaagaccc
ttagacccagtatcatacaatcacatattgtatactttgcctacacttggtgttcacaag
gtatgtgtagggcagatcctgcgggtaattcagctgcttgggaccactccacgactaaga
gctgtcacgttgcgcctgttgacatctctgtgggaaaagcaggatcgtgtgtaccctgaa
ctgcagcgtttcatggccgtgtctgacgcgccctccctctctgtgggcaaggagctccag
tgggagaaactgattgcaaaagctgcgtccatcagagatatatgtaaacagaggccctat
cagcatggtgcagacatgctcgcagccatttctcaggtgttgaatgaatgcaccaagcct
gatcaagctactccagccgccttggtgttacaaggtcttcatgcactctgccaggctgag
gttgtctgtatccgctccacttggaatgctctctctcccaagctgagctgtgacatgaga
ccactcatattgaagaccctgagtgaactgttctctttggttccttccttaacagtcaat
acagttgaatatgagaattttaaagttcaagtcctcagcttcctctggactcacactcaa
aacaagaatcccactgtagcaagtgctgcatataagtctctgtctcacttcagtgctgga
gaacacaccattcttcacctgccagaaaagataaggccagagatgcctgttcctggtgag
ctggatgaagaggaatctgtggacctttccattcctggcgcgtgctttctcagactgctg
accatcactgccccttcggttttaccagcattggaagaattctttacatctcttgtgaga
caagagatggtgaatatgccccgtgggatatatcactctgcattgaaaggaggcgtgcgc
tcagaccaagggaagacagtagcaggaatcccgaacttcatattgaagacatacgaaaca
aacaagcaaccaggattgaaacctggcctggcaggtggcatgctgttttgctatgatctt
gccatgtatcagagcaaagatggcaagccactgaatcggctgatggccagtagagggcga
agcttcaagcagacaacactggctctcattcatgaagtccatgtccagctttcagaatgg
caccgtgcaatctttcttccacaggcctggcttgcatacatgactcgagcttaccatgcc
attttacagggaaggatagcagagctggagctgcagctgcagcacggcaaggaaggccct
gaggaggtgcaatacaaacgaagcacagcctggctctgggtcagagacatgctgacagat
gagatcaccaagacagctgcaaaagagagtccggtggtgaaagccaatgccctgttagcc
ttaagcagcctggccgttgtggtgtccaagcatgaagccagcctttgctcagactccgat
ggcgtcctagagatccaacctaatttccttccagtgaaagagtgggtttccatggtgctt
aatactctcctggtcattgtggatagccattaccaccccagtggacaactcttcacctgc
ttttatcataagtcctattctggcgagaacacagcgagcgctattgcgcgctctgctgcc
gccacggctttgtctctcctagtgccagttttcattatctcatgcaaagagaaggttgag
gaaatcctgaacatgctgactgccaggttacctgggaaaccaagtgctgatgaatctcag
gccgtgcaaatccacatgggccttgcgttggggatgtttctctctcgcttgtgtgaagag
aagctcagtgacatgtctggacaacagatgaaccttcttctgatgaagtccttggatgcc
ctggaaagctgctgttttgaccccagtcttgaatacaacaccggctgtattctgggagtt
ggacttgccctgtccctcatgagccacagcagccacacggagtcccgggtccatgtggca
gcatctctgcggaagctgtctacctacctagatgagagcgggagccagagcaggacattt
caggaggtcctcgtctacacacttagctgtgtgtgtacatcagcattcagtgctggcatt
attgaagctgcagaggctgaagatattatgagcaagcttcagctgttggtggagaacaac
cagcagacctcaggctttgcactggcattaggaaacttggtttatggtttgtctgtgtgt
ggacatggaaaagctgaagacttgggcaacagacttcgccccagctggattaaagttgtc
ctgacagagggtgcccccaccatgctctgtctggctgcccttcatggcctggtggcactg
gtaggctctgatgtggatgtcatgcagctgaagtcagaagccatccagaacacccacttt
caagcaagacttaatgaagtcattcgaaccttaactgaggttatcagtgtctcaggagtg
attggccttcaatcaaatgccatatggctgctgggacatcttcatctgtctaccttgtct
tcaaatcaaagcagaacttccgttcctactgactacagctatttgcccgaaggcagtttt
attagagcagccattggtttcttcatcacgggaggaaaaaaaggtcctgaagctgtgcct
ccatcccttctcaaagtagtgatgaaacccatagcaactgttggggaaagctaccagtac
cctcctgcaaacttggccgcactactctctcctcttatgaggctaaactttggtgaagag
atacagcaactgtgccttgagattgctgtcactcaggcaccgtcgtcgcagagcgcggcc
tcactgctgggcttgtgggtgatgccgccactgatccacggtctgagtctgaatatcaag
aaatacctcctggtatccatgcctctgtgggcaaagcacgtgtctgatgaacagatccag
ggttttgttgaaaacctgatggtggaagtttttaaaacagcttcccaaccgtgccatcct
gagatgtgcctaagtgccttacagggtctgagccaggccatgaaactgcccagtccttcc
caccacctctggagtctgctctgcgatgctactgggagaatttttgaccttctgccaaat
aggattcggagaaatgatctcgagctgtacatcagtatagcaaagtgcctctcagagatg
acggacgaaggtgtcaatcaggtttcccagattactaaggacaacatagaaaaggccgcc
tttgtcaagttgtatttagtctctcaaggacgactcccgttgatgagcctgactgatcta
ctcactgctgctatgcagcaccccgagaaggagactctagcgtggatgatcctgcacagc
ttataccaggcacgcatcgtcaaccatgccaacacaggtgtgttgaagagattggagtgg
ctcttagaactgatgggttatgtgagaaacattgcttaccagtcagcacctatacagaat
gtggctcctgaagaggctttggacttcttgatgctgatatttgcagctgcagtggtggca
tgggcagaccatgaggccccccttctccttggccttagtgccagttggttgccatggcac
cagcagaatggccctggtgggccagcagcagccttgcttggcaggagtcccatgcataga
gtcactgtgcaagaggttctcactcagctccccaggagcatgctactgctgctacaaaaa
gagccatggaaggaacagacccagaagttcattgactggctattgagcatcatggaaatt
cctaacaaagcctttgcagcaaagtccaaggaccttttgaaagccaccctgctatccctg
agagttctcccagagtttaagaagaaagctgtatggaccagagcgtatgggtggtga

  All links  
Gene (28)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
Protein sequence (16)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (14)   
DNA sequence (30)   
   RefSeq(nuc) (14)   
   GenBank (8)   
   EMBL (8)   
Protein domain (2)   
   Pfam (2)   
All databases (76)   

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