KEGG   Mus musculus (house mouse): 234594
Entry
234594            CDS       T01002                                 
Symbol
Cnot1, 6030411K04Rik, D830048B13
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform 3
  KO
K12604  CCR4-NOT transcription complex subunit 1
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    234594 (Cnot1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    234594 (Cnot1)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     234594 (Cnot1)
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     234594 (Cnot1)
SSDB
Motif
Pfam: Not1 CNOT1_CAF1_bind NOT1_connector ARM_Cnot1 CNOT1_TTP_bind DUF3819 CNOT1_HEAT CNOT1_1st
Other DBs
NCBI-GeneID: 234594
NCBI-ProteinID: NP_001192155
MGI: 2442402
Ensembl: ENSMUSG00000036550
UniProt: A0A1D5RMJ8
Position
8:complement(96445559..96534741)
AA seq 2369 aa
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLKLS
KVQEVIFGLALLNSSSPDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEVLH
LLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRILPD
SGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMARTHS
GLTDGIPLQSISAPGSGIWSDGKDKSEGAQAHTWNVEVLIDVLKELNPSLNFKEVTYELD
HPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDFIYRPWKHAEGQLSFIQHSLINPEVFCFA
DYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHCPD
MLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHAM
AEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKWLT
DKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPAETLATMLACLQACAGSV
SQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASLSI
GGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGGLG
TGSLTGIGTGALGLPAVNNDPFVQRKLGTSGLNQPTFQQTDLSQVWPEANQHFSKEIDDE
ANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQYPD
KELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKD
YPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQAQAQAQVP
AKAPLAGQVNTMVTTSTTTTVAKTVTVTKPTGVSFKKDVPPSINTTNIDTLLVATDQTER
IVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHS
LYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKN
KPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVFRPPNPWTMAIMNVLA
ELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPKKDVKQPE
ELPAITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTIPLFQAHP
QLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIAAHHMMRN
LTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNCELACCFI
QKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPK
QLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELEQHLHAIP
PTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADLLLRYREC
HLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLA
QSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIETLMRINAHSRGNAPEGLP
QLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAA
AGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAANPTM
IRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDVRQSEFQQ
LPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIF
IARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFP
EFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTN
FTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQLINALVLYVGTQAI
AHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCT
MLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAP
EIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq 7110 nt   +upstreamnt  +downstreamnt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgcctattttcacatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagtttctgattcaggagtgtgcctcgctgatt
acaaagccaaattttatctcaacattgtcatatgccattgataatccattgcactaccag
aagagtttaaagcctgcaccccacttatttgcccagctgagtaaagttctcaagctaagt
aaagtacaggaggtcatttttggtcttgcccttttgaattcttctagcccagatctcagg
ggttttgctgcccagtttattaaacagaagcttccggatcttctgcgttcttacattgac
gcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtcctacac
ctcctactctcccatctcctctttgggcagaagggagcctttggagttggacaggaacag
atagacgcctttcttaagacactacgcagagattttccccaagagcgctgtcctgtggtg
cttgcaccacttttataccctgaaaaacgggacattctaatggacaggattttgcctgat
tctggaggggtagctaaaaccatgatggagagctcgctagctgacttcatgcaggaagtg
ggctatggcttttgtgcaagtattgaagaatgtcgcaatataatcatgcagtttggtgtt
cgggaggtcacagctgcccaggttgccagggttttgggaatgatggctcggactcattca
ggattaacagacggtattccattacagagcatctctgctcctggcagtgggatctggagc
gacggaaaagataaaagcgagggggcacaggcacacacgtggaatgtcgaggttttgatt
gatgttcttaaagagctgaacccgagtttgaatttcaaggaagtaacttatgaactggac
catcctggatttcagattcgtgacagcaaaggacttcacaatgtggtttatggcattcaa
aggggtctgggcatggaagtgtttccagtagattttatatataggccttggaaacatgca
gaaggccagctctccttcatccagcattccctgataaacccagaggtcttctgttttgct
gactacccctgtcacactgttgccactgatattttgaaagcaccaccagaggatgacaat
cgagaaattgccacatggaaaagcttggatttgattgaatctctgctgaggcttgcagag
gttgggcagtatgagcaagtgaaacaactcttcagcttccctatcaaacactgtccagac
atgttggtattggccttacttcaaatcaacacttcctggcacaccctacgccatgaactc
atctctactttgatgccaattttccttggaaaccatcctaactctgccattattttgcac
tatgcatggcatgggcaggggcagtctccatcaattcgccaacttataatgcatgcaatg
gcagaatggtacatgagaggggagcagtatgatcaggccaaattgtctcgaatacttgac
gtggcccaggacttgaaggccctgtcgatgctgctgaacggcactccatttgcttttgtc
attgaccttgctgcactcgcttcacggcgggaatacctcaaacttgacaagtggctaaca
gataagataagagagcatggggagccttttatacaagcatgtatgacttttttaaagaga
aggtgcccttctattttgggtggacttgccccagagaaagatcagcccaaaagtgctcaa
cttcccgctgaaactctggcaacaatgttggcttgtctgcaggcttgtgcagggagtgtt
tctcaagagttatcagagaccatcctcaccatggtagccaattgcagtaatgtaatgaat
aaggccagacagccaccacctggagttatgccaaaaggtcgccctcctagtgctagcagc
ttagatgccatttctcctgttcagattgaccctcttgctggaatggcatctcttagtata
ggtggttcggctgcccctcacacccagagcatgcagggttttcctccaaatctgggttct
gcgttcagtacccctcagtcaccagcaaaagcatttccaccactttcaaccccaaatcaa
acaacggccttcagtgggattggaggactctcctcacagcttccagtaggtggtcttggc
acaggaagcctgactggcataggaactggggcccttggacttcctgcagtgaacaatgat
ccttttgtacagaggaaactgggcacctctggactcaaccagcctacattccagcagacc
gacttgtctcaggtgtggccagaggcaaatcagcactttagtaaagaaattgatgatgaa
gcaaacagttatttccagcgaatatataatcacccaccacatccaaccatgtctgttgat
gaggtattagaaatgctacagagatttaaagactctacaataaaaagggaacgagaagta
tttaactgtatgctgaggaacttgtttgaagaataccggtttttccctcagtaccctgat
aaagaattacatataacagcttgcttgtttggtggcataattgaaaaaggactggtcact
tacatggcattgggtctggccctgcgatatgttcttgaagccttacggaagccttttgga
tccaaaatgtattattttggtattgctgcactagatagatttaaaaatagattgaaggac
tatcctcagtattgtcagcacctggcttctatcagccactttatgcagttcccacatcat
ttgcaggagtacattgagtacggacagcagtctcgagatcctcctgtgaaaatgcagggc
tctattactacccctggaagtattgcactggctcaggcccaggctcaggcccaggttcca
gcaaaagctcctcttgccggtcaggttaacacaatggtaaccacctcaacaaccaccact
gttgctaaaacggttacagtcaccaagccaacgggagtcagctttaagaaagatgtgcca
ccttctataaatacaacaaatatcgatacattgcttgtggccacagatcaaactgagagg
attgtggagcccccagaaaatattcaagagaaaattgcttttattttcaacaatctctcc
cagtcaaatatgacacagaaggttgaagagcttaaagaaactgtgaaggaagaatttatg
ccttgggtttcccagtatctggttatgaaaagagtcagtattgagccaaactttcatagc
ctgtattcaaactttcttgatacattgaagaatcctgaatttaacaagatggttctgaat
gaaacctacagaaacattaaagtgctgctgacttctgataaagctgcggccaatttctca
gatcgttctttgctgaagaacttgggacattggttaggaatgatcacattagctaaaaat
aaacccatcttacacacagacttggatgtgaaatctttgctgttagaggcttacgttaaa
ggacagcaagagttgctctatgtggtgccctttgttgccaaagttctagagtccagcatt
cgcagcctggtttttagaccaccaaacccctggacaatggcaattatgaatgtattggct
gagctgcatcaggagcatgacttaaagttaaacctgaagtttgagattgaggtgctctgt
aagaaccttgcattagacatcaatgagctcaaacctggaaacctgctgaaagataaagat
cgtctgaagaacttagatgagcaactctctgctccaaagaaagatgtcaagcagcccgaa
gagcttcctgccatcacaacaacaacaacttctacaacaccagctaccagtactacgtgt
acagccacagttccaccacagccacagtacagctaccacgacatcaatgtctactctcta
gcaggcctggcacctcatattactctaaaccctacaatccctttatttcaagctcatcct
cagctgaagcagtgtgtgcggcaagcaattgaaagagctgtccaggagcttgtccatcct
gtggtggatcgctcaattaagattgctatgactacgtgcgaacagatagtcagaaaggac
tttgccctggattctgaggagtctcgaatgagaatagcagctcatcacatgatgcggaac
ttgacagctggaatggctatgattacttgcagggaacctttactgatgagcatatccacc
aacctcaaaaacagctttgcctcagccctgcgtactgcatccccacagcaaagggaaatg
atggaccaggctgctgctcagttagctcaggacaattgtgaattagcttgttgttttatt
cagaaaactgcagtggagaaagcaggccctgagatggacaagagattggcaactgaattt
gagctgaggaagcatgcccggcaagaaggacgtaggtactgtgatcctgtggtcttaacc
taccaagccgagcggatgccggagcagatcaggctgaaagttggtggtgtggacccaaag
cagctagccgtctatgaagagtttgcacgaaatgtgcctggcttcttacctacaaatgac
ttaagtcagcctacagggtttttagctcagcccatgaagcaagcttgggcaactgatgat
gtagcgcagatttatgataagtgtattacagaactggagcagcacctacacgccattcca
cccactctggccatgaatcctcaagcccaggctctccgaagtcttttagaggttgtagtg
ttgtctcggaattctcgggatgcgatagctgctcttggattactacagaaggctgtagaa
ggcttattagatgccacaagtggtgctgacgccgacttactgctgcgatacagggagtgc
cacctgttggtactgaaagctctgcaggatggcagggcatatggatctccatggtgcaac
aaacaaatcacaaggtgcctaattgaatgtcgagatgaatataaatataatgtggaggct
gtggaattgttaattcgaaatcatttggttaacatgcagcagtatgatcttcatcttgct
cagtcgatggagaatggcttgaactatatggccgtggcgtttgctatgcaactggtaaaa
attctgctggtggatgaaaggagtgttgcccatattactgaggcagatctgttccatacc
attgaaaccctcatgagaattaatgctcattccagaggcaatgctccagaagggttgccc
cagctgatggaagtggtgagatccaactatgaagcaatgattgatcgtgctcatggaggc
cctaactttatgatgcattctgggatctctcaagcctcagaatatgatgaccctccaggc
ctgagggagaaggcagagtatcttctgagggaatgggtgaatctctaccattcagcagca
gctggccgcgacagtaccaaagcattctctgcgtttgttggacagatgcaccaacaagga
atacttaaaactgatgacctcataacaaggttttttcgtctttgcactgaaatgtgtgtt
gaaatcagttaccgtgctcaggcggagcagcagcacaatcctgcggctaaccctaccatg
atccgggccaagtgctaccacaacctggatgcctttgtccgcctcattgcactgttagtg
aagcactctggggaggccaccaacactgtcacaaagatcaacctgctcaataaggttctc
ggtatagtagtgggagttctcctacaggatcatgatgttcggcagagtgaatttcagcaa
cttccgtaccataggatttttatcatgctgctgttggagctcaatgcacccgagcatgtg
ttggaaaccattaatttccagactcttactgctttctgcaatacattccacatcttgaga
cctactaaagctcctggctttgtatatgcttggctcgaattgatttcccatcggatcttt
attgcaagaatgctggcacatacgccacagcagaaggggtggcctatgtatgctcagctg
ttgattgatttattcaaatatttagcacctttccttagaaatgtggaactcactaaacct
atgcaaatcctctacaagggtactctgagagtgctgctggttcttttgcatgatttccca
gagttcctttgtgattaccattatgggttctgtgatgtgatccctcctaattgtatccag
ttaagaaatttgatcctgagtgccttcccaagaaacatgaggctcccagacccattcact
cctaatctgaaggtggacatgttaagcgaaattaacatcgcacctcggatcctcaccaat
ttcactggagtgatgccgcctcagttcaaaaaggatttggattcttatcttaaaactcgg
tcgccggtcactttcctgtctgatctgcgtagtaacctacaggtatctaatgagcccggg
aatcgctacaacctccagcttatcaatgcattggtgctctacgtagggactcaggctatc
gcacacatccacaacaagggcagcacgccctcaatgagcaccatcacccactcagcacac
atggacatcttccagaacctggctgtggacctagacactgagggccgatatctcttctta
aatgcaattgcgaaccagctacggtacccaaacagccacactcactacttcagctgcaca
atgttgtacctttttgctgaggcgaacactgaggcaatccaggaacagatcacaagggtt
ctcttggaacggttgattgtaaataggccacatccttggggtcttcttatcaccttcatt
gagctgattaaaaacccagcatttaagttctggaaccatgaatttgtacactgtgcccca
gagattgaaaagttatttcagtctgttgcacagtgctgcatgggacagaagcaggctcag
caagtgatggaggggaccggtgccagttag

  All links  
Gene (59)   
   RefGene (52)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   RIKEN BRC-DNA (3)   
   OC (1)   
Protein sequence (13)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (10)   
DNA sequence (48)   
   RefSeq(nuc) (12)   
   GenBank (18)   
   EMBL (18)   
Protein domain (8)   
   Pfam (8)   
All databases (128)   

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